genome.fa.s8160.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008160.1 Hibiscus syriacus cultivar Beakdansim tig00110729_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1466564

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 773 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1424474--1424643	52	3.2	52	94	2	279	15	21	18	45	1.85
1424480--1424657	33	5.2	33	72	17	157	14	21	18	46	1.84
1427798--1428047	20	12.5	20	87	1	268	19	18	24	37	1.94
1428034--1428116	21	4.0	21	73	6	78	25	16	24	33	1.96
1428014--1428112	42	2.4	43	77	11	100	21	18	23	37	1.94
1428592--1428633	22	1.9	22	90	0	66	45	4	4	45	1.45
1428734--1428778	21	2.1	22	87	4	65	42	6	4	46	1.50
1428835--1428873	15	2.6	15	91	0	69	33	0	5	61	1.18
1428867--1428898	16	2.0	16	93	0	55	37	3	15	43	1.63
1428883--1429039	11	13.0	11	71	21	86	45	3	7	43	1.48
1428926--1429039	52	2.3	49	86	4	147	47	2	7	42	1.46
1429157--1429196	17	2.5	15	88	8	53	45	0	2	52	1.14
1431877--1431901	4	6.2	4	100	0	50	52	24	0	24	1.48
1433367--1433429	17	2.9	24	67	30	68	38	0	4	57	1.20
1434200--1434244	22	2.0	22	91	0	72	62	15	11	11	1.55
1434198--1434256	22	2.8	21	82	7	66	62	13	10	13	1.54
1435598--1435661	31	2.1	31	90	0	101	45	18	14	21	1.85
1437134--1437280	61	2.4	61	82	2	179	36	6	5	51	1.52
1437335--1437532	18	10.9	18	73	16	169	40	4	8	46	1.54
1437311--1437529	51	4.1	52	71	12	151	40	4	7	47	1.51
1437380--1437428	25	2.0	25	87	0	71	40	8	8	42	1.64
1437347--1437467	58	2.1	58	92	0	197	41	5	8	44	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1437444--1437530	9	9.7	9	68	18	56	40	3	6	49	1.46
1439382--1439416	2	17.0	2	94	5	61	48	0	2	48	1.16
1439399--1439467	33	2.1	32	91	2	111	42	5	8	43	1.59
1439407--1439475	33	2.2	32	89	5	104	39	7	10	43	1.66
1439446--1439480	18	1.9	18	100	0	70	40	8	11	40	1.72
1439501--1439567	33	2.1	32	88	2	98	50	5	5	37	1.51
1439518--1439591	20	3.5	20	77	16	85	52	1	6	39	1.36
1439518--1439578	23	2.7	23	79	16	74	54	1	6	37	1.37
1439531--1439580	13	3.8	13	77	17	59	54	2	6	38	1.37
1439630--1439783	2	81.5	2	66	20	73	48	3	1	46	1.26
1439631--1439784	11	13.8	11	68	18	70	48	3	1	46	1.26
1439826--1439894	27	2.5	28	79	9	79	39	4	7	49	1.50
1439878--1439903	2	13.0	2	100	0	52	50	0	0	50	1.00
1439927--1440741	210	3.8	212	92	2	1275	29	12	7	50	1.67
1441698--1441736	19	2.1	19	100	0	78	25	15	10	48	1.76
1448644--1448687	12	3.6	12	81	3	52	18	4	0	77	0.94
1451799--1451898	21	4.9	20	87	3	137	16	30	35	19	1.93
1451799--1451901	20	5.1	20	88	4	152	15	29	36	18	1.92
1451799--1451901	41	2.5	41	93	0	170	15	29	36	18	1.92
1453027--1453118	24	3.8	24	83	8	116	41	17	15	26	1.88
1454600--1454719	63	1.9	63	94	0	213	27	27	9	35	1.87
1457374--1457421	19	2.5	20	82	3	62	29	12	6	52	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1458278--1458347	34	2.1	34	86	5	99	22	25	15	35	1.94
1459077--1459142	22	3.0	22	100	0	132	27	27	27	18	1.98
1459362--1459421	30	2.0	31	90	3	95	33	23	6	36	1.81
1459437--1459504	28	2.4	29	87	4	95	39	11	10	38	1.76
1459800--1459944	64	2.2	64	84	6	177	17	27	26	28	1.98
1459924--1459966	21	2.0	21	86	0	59	16	25	27	30	1.97
1465821--1465885	21	3.0	22	95	4	116	26	26	27	20	1.99
1466096--1466153	29	2.0	30	86	10	84	34	20	6	37	1.80
1466168--1466235	27	2.4	28	90	4	102	38	13	10	38	1.78

Tables:   1   2   3   4   5   6   7

The End!