genome.fa.s8163.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008163.1 Hibiscus syriacus cultivar Beakdansim tig00110737_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  266294

Tables:   1   2   

This is table  2  of  2  ( 180 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195917--196005	23	4.2	20	74	16	65	15	8	1	74	1.12
195931--196005	32	2.4	31	78	10	73	17	8	1	73	1.14
195883--196001	53	2.3	52	81	12	138	17	8	0	73	1.13
195883--196005	54	2.3	53	81	13	135	17	8	0	73	1.11
195881--196007	18	7.4	17	68	17	66	16	7	0	74	1.09
195987--196038	22	2.4	20	76	17	50	21	3	0	75	0.97
196249--196373	21	5.9	21	72	11	85	16	7	1	74	1.12
196319--196373	26	2.1	26	83	6	67	16	3	1	78	0.98
197282--197342	31	2.0	31	93	0	104	26	9	9	54	1.64
197278--197353	31	2.5	31	86	0	98	26	10	15	47	1.78
198321--198384	31	2.1	31	88	5	94	51	9	7	31	1.62
201738--201797	29	2.1	29	96	0	111	28	11	10	50	1.71
208050--208124	20	3.8	20	77	11	73	32	16	22	29	1.95
210349--210388	21	2.0	20	85	14	55	42	17	10	30	1.82
211964--212800	181	4.6	181	85	4	1030	42	13	16	27	1.85
211965--212800	361	2.3	360	84	4	1071	42	13	16	27	1.85
217630--218309	199	3.4	199	89	3	1012	39	13	14	32	1.86
218444--218494	23	2.2	23	86	6	68	35	19	7	37	1.81
221711--221767	24	2.4	24	96	0	105	45	15	12	26	1.82
224449--224500	27	1.9	27	84	7	70	36	3	1	57	1.28
235514--235648	4	33.8	4	93	0	162	43	48	7	0	1.36
236153--236256	36	2.9	36	81	1	111	32	18	11	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236446--236507	28	2.2	28	88	0	88	20	12	14	51	1.75
236611--236731	64	1.9	64	86	5	174	29	13	14	42	1.83
236816--236930	31	3.7	31	74	8	99	27	17	13	41	1.86
236785--236916	31	4.2	31	75	9	101	29	15	14	40	1.87
236792--236915	62	2.0	62	82	3	151	30	15	12	41	1.85
236941--237453	135	3.9	132	78	11	437	28	27	17	27	1.98
237614--237677	3	20.7	3	87	3	56	35	6	0	57	1.24
239242--239298	2	28.5	2	100	0	114	50	0	0	49	1.00
240765--240796	14	2.3	14	94	0	55	37	18	18	25	1.94
240943--240994	20	2.6	20	96	0	95	38	26	13	21	1.90
240984--241082	21	4.8	20	72	6	72	36	23	19	21	1.95
241049--241242	20	9.6	20	81	5	221	35	25	19	19	1.95
241049--241242	60	3.2	60	83	0	253	35	25	19	19	1.95
241623--241693	33	2.2	33	92	0	115	11	22	18	47	1.80
241814--241868	14	3.6	14	73	21	56	40	23	27	9	1.85
241814--241884	33	2.2	33	92	0	115	42	25	23	8	1.82
241880--241977	19	5.7	19	70	22	81	10	24	22	42	1.84
241902--241991	14	5.7	14	74	23	81	8	25	23	42	1.83
241885--241999	33	3.5	33	95	0	212	9	24	20	45	1.81
243697--244077	185	2.1	185	97	1	737	22	12	18	46	1.83
243697--244075	93	4.1	93	98	1	735	22	12	18	46	1.83
244136--244228	33	2.8	32	91	4	150	46	27	18	7	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
244119--244228	19	6.3	19	71	20	87	45	28	17	9	1.78
244224--244358	19	7.6	19	76	16	137	10	19	24	45	1.81
244246--244302	14	3.7	14	77	20	60	8	21	24	45	1.80
244229--244321	33	2.8	33	98	0	177	9	20	22	47	1.79
246163--246235	38	1.9	38	97	0	137	28	1	16	53	1.51
246158--246222	19	3.4	19	64	8	51	24	1	15	58	1.46
246217--246252	14	2.6	14	95	0	63	33	0	22	44	1.53
246359--246460	19	5.6	19	84	13	151	44	17	23	14	1.86
246489--246814	19	18.4	19	80	15	405	14	20	17	47	1.82
246467--246786	52	6.0	52	94	4	550	14	21	16	46	1.83
246489--246814	71	4.6	72	82	13	389	14	20	17	47	1.82
246467--246786	161	2.0	157	93	3	552	14	21	16	46	1.83
246508--246814	33	8.8	33	80	12	280	14	20	17	47	1.82
249308--249354	24	2.0	24	87	8	69	38	21	14	25	1.92
250020--250385	20	18.5	20	86	5	456	19	19	26	34	1.96
257737--257761	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1   2

The End!