genome.fa.s8170.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008170.1 Hibiscus syriacus cultivar Beakdansim tig00110761_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  686002

Tables:   1   2   3   

This is table  1  of  3  ( 318 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1054--1124	33	2.2	33	92	0	115	11	22	18	47	1.80
1204--1298	20	4.8	19	79	11	102	45	17	24	12	1.83
1202--1297	39	2.4	39	85	3	129	45	17	25	11	1.82
1317--1399	19	4.7	18	81	14	102	12	21	22	43	1.86
1357--1413	14	3.7	14	72	20	51	10	22	24	42	1.85
1339--1421	33	2.5	32	92	5	139	10	22	21	44	1.83
3107--3572	184	2.5	185	96	1	857	21	12	18	46	1.82
3107--3572	93	5.1	93	95	1	859	21	12	18	46	1.82
3620--3747	19	7.3	19	70	19	98	44	28	17	9	1.80
3655--3747	33	2.8	32	88	3	132	45	26	19	8	1.79
3620--3747	52	2.5	51	71	13	125	44	28	17	9	1.80
3743--3877	19	7.6	19	75	16	128	11	19	23	45	1.82
3765--3821	14	3.7	14	77	20	60	10	21	22	45	1.82
3748--3840	33	2.8	33	95	0	168	10	20	21	47	1.80
5790--5824	14	2.6	14	90	4	54	28	0	22	48	1.51
5777--5833	13	4.4	13	80	10	55	28	0	21	50	1.48
5930--5992	20	3.4	19	93	6	103	44	17	22	15	1.86
6039--6241	19	11.4	19	81	16	265	14	21	17	46	1.83
6017--6255	71	3.4	71	95	3	425	13	22	17	46	1.84
6017--6255	33	6.9	33	84	11	327	13	22	17	46	1.84
8529--8553	12	2.1	12	100	0	50	0	28	0	72	0.86
9452--9681	20	11.5	20	85	1	237	19	18	24	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9668--9750	21	4.0	21	73	6	78	25	16	24	33	1.96
9648--9746	42	2.4	43	77	11	100	21	18	23	37	1.94
21434--21484	16	3.1	16	83	8	59	45	7	0	47	1.32
36713--36799	42	2.1	42	85	8	115	28	3	17	50	1.62
37088--37135	23	2.1	23	88	0	69	35	12	18	33	1.89
37340--37406	30	2.2	29	82	10	73	44	0	2	52	1.16
37177--37828	327	2.0	327	97	0	1243	38	11	6	43	1.67
37889--37952	23	2.8	23	92	0	101	39	20	4	35	1.73
38355--38441	39	2.2	39	95	0	156	17	13	20	48	1.81
38700--38736	18	2.1	18	89	0	56	51	10	5	32	1.60
39125--39175	25	2.0	25	92	0	84	39	19	7	33	1.81
39444--39495	23	2.3	22	90	6	77	44	19	1	34	1.62
39454--39516	23	2.7	23	90	0	90	38	19	4	38	1.73
39453--39528	23	3.5	22	83	5	66	35	19	5	39	1.75
40613--41321	183	3.9	183	96	0	1292	33	16	14	35	1.89
42745--42798	3	18.0	3	84	0	72	25	33	3	37	1.74
42745--42802	12	4.8	12	93	0	80	25	32	5	36	1.78
42745--42813	18	3.8	18	86	0	75	23	33	5	37	1.79
42758--42810	12	4.4	12	92	0	70	22	33	7	35	1.83
44273--45239	395	2.4	395	98	1	1866	31	16	15	37	1.90
44273--45239	197	4.9	198	98	1	1868	31	16	15	37	1.90
45357--45406	19	2.6	19	93	0	82	56	10	2	32	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47201--47266	33	2.0	33	90	0	105	22	48	0	28	1.51
49588--49634	20	2.4	19	80	19	69	21	17	10	51	1.75
49752--49795	20	2.2	20	88	11	65	15	18	11	54	1.70
56203--56253	25	2.1	24	85	10	68	47	0	1	50	1.12
63068--63094	2	13.5	2	100	0	54	51	0	0	48	1.00
63801--63851	25	2.0	26	88	3	77	31	5	1	60	1.31
73711--73785	27	2.8	27	86	9	93	32	6	21	40	1.79
76870--76907	18	2.1	18	90	0	58	15	42	13	28	1.85
78885--78951	32	2.1	32	94	5	118	35	10	11	41	1.76
90110--90183	26	3.1	23	71	17	62	44	1	2	51	1.24
91511--91563	3	17.7	3	88	7	81	35	0	0	64	0.94
92385--92478	44	2.2	44	98	1	181	44	0	41	13	1.44
105568--105666	15	6.4	15	76	18	80	76	1	14	8	1.05
105574--105644	7	9.4	7	74	19	54	76	1	14	8	1.09
106672--106835	87	1.9	89	88	10	257	40	14	18	26	1.89
106877--106969	39	2.5	36	85	11	118	45	11	23	19	1.83
106772--107082	144	2.2	143	85	2	410	42	15	19	22	1.88
107215--107266	3	17.7	3	92	4	88	36	0	0	63	0.95
108093--108179	43	2.0	44	97	2	167	44	0	41	13	1.44
113933--113966	12	2.8	12	100	0	68	32	14	17	35	1.91
122162--122197	18	2.0	18	88	0	54	30	16	0	52	1.44
123503--123534	7	4.4	7	92	7	55	25	28	34	12	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123504--123550	15	3.3	15	91	5	71	21	25	38	14	1.92
123532--123608	18	4.6	18	81	15	110	11	20	50	16	1.76
123526--123604	31	2.5	31	95	0	149	13	21	48	16	1.81
123504--123550	8	6.5	8	79	20	59	21	25	38	14	1.92
123511--123586	13	5.3	13	77	17	71	17	22	44	15	1.86
125692--125798	24	4.5	24	72	0	88	47	15	13	23	1.81
125692--125800	48	2.3	48	75	0	110	47	15	13	22	1.81
128257--128287	7	4.4	7	100	0	62	25	29	32	12	1.93
128285--128361	18	4.6	18	81	15	110	11	20	50	16	1.76
128279--128357	31	2.5	31	95	0	149	13	21	48	16	1.81
128279--128339	13	4.3	13	77	18	68	14	21	47	16	1.82
130290--130346	29	1.9	30	85	3	80	19	1	12	66	1.32
130421--130460	11	3.3	12	82	10	55	30	0	0	70	0.88
144471--144510	20	2.0	20	95	0	71	20	25	27	27	1.99
145494--145990	248	2.0	248	86	8	697	26	12	19	41	1.87
174207--174851	180	3.6	180	84	5	769	17	28	14	39	1.88
174942--175075	66	2.0	66	97	0	250	15	20	19	44	1.86
176289--176409	59	2.1	59	83	0	152	29	16	19	34	1.93
182871--182996	50	2.5	50	78	5	137	17	34	26	21	1.95
183117--183157	10	4.1	10	84	12	57	31	29	0	39	1.57
183281--183502	111	2.0	111	96	0	408	36	8	11	44	1.71
185355--185411	12	4.5	12	72	12	51	31	17	35	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185355--185404	9	5.6	9	82	0	64	32	18	36	14	1.90
187590--187670	38	2.1	39	86	6	112	19	29	32	18	1.96
188929--188985	21	2.7	21	76	7	62	35	21	19	24	1.96
188990--189037	19	2.6	19	90	6	73	39	29	18	12	1.88
188971--189037	19	3.7	17	84	8	71	40	26	19	13	1.89
189026--189214	20	9.4	20	84	4	229	35	25	17	21	1.95
189574--189629	19	3.3	19	63	31	54	28	16	23	32	1.96
189573--189634	31	2.0	31	100	0	124	29	16	22	32	1.95
190143--190167	12	2.1	12	100	0	50	72	0	28	0	0.86
190610--190751	71	2.0	70	95	4	259	27	26	21	24	1.99
192413--192592	33	5.2	33	75	13	175	46	18	22	12	1.82
192427--192668	19	13.7	19	76	19	256	45	17	22	14	1.84
192413--192592	86	2.1	84	86	12	242	46	18	22	12	1.82
192427--192662	53	4.5	53	95	1	422	46	17	22	13	1.83
192480--192638	33	4.6	33	72	20	128	46	16	23	13	1.82
192658--192762	19	6.1	18	79	17	109	13	24	17	44	1.84
192658--192762	51	2.0	52	94	5	187	13	24	17	44	1.84
193787--193856	19	3.7	19	86	0	104	47	21	20	11	1.81
193868--193895	14	2.0	14	100	0	56	7	14	28	50	1.69
193852--193975	33	3.7	33	87	1	167	9	17	25	46	1.79
193852--193943	19	5.4	18	67	24	56	8	17	26	47	1.76
194073--194387	93	3.4	93	97	0	596	45	18	13	21	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196069--196168	21	5.1	21	74	18	117	48	16	26	10	1.77
196069--196176	35	2.9	35	91	8	162	46	17	25	10	1.80
196118--196147	14	2.1	14	100	0	60	46	20	26	6	1.75
196217--196294	41	1.9	41	97	0	147	12	25	16	44	1.83
196218--196293	21	3.7	21	83	3	109	11	25	17	46	1.82
196373--196443	33	2.2	33	94	0	124	47	16	23	11	1.79
196823--196995	20	8.6	20	87	3	242	19	18	27	34	1.95
196963--197016	20	2.7	21	88	5	76	12	16	25	44	1.84
196822--197015	60	3.2	59	84	4	237	19	18	26	35	1.95
202508--202587	40	2.0	39	92	2	133	26	20	13	40	1.89

Tables:   1   2   3