genome.fa.s8170.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008170.1 Hibiscus syriacus cultivar Beakdansim tig00110761_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  686002

Tables:   1   2   3   

This is table  3  of  3  ( 318 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
475100--475133	16	2.0	18	88	11	54	64	5	2	26	1.30
475749--475814	24	2.8	24	88	0	96	9	16	18	56	1.66
475720--475881	24	6.8	24	70	2	76	14	12	14	59	1.62
477137--477184	17	2.9	17	79	14	55	31	2	4	62	1.26
477316--477349	16	2.0	18	88	11	54	26	2	5	64	1.30
477815--478062	130	1.9	130	92	0	415	35	13	15	35	1.86
478457--478532	35	2.2	35	90	0	116	34	1	23	40	1.63
478828--479030	14	15.7	13	74	23	148	39	0	2	56	1.21
478831--478909	17	4.8	16	74	22	58	36	1	6	55	1.33
478831--479044	34	6.5	33	78	18	166	38	0	2	57	1.19
478876--479021	2	82.5	2	69	29	102	40	0	1	57	1.12
478873--479051	22	8.4	20	71	19	98	38	0	1	59	1.09
478873--479051	28	6.2	27	75	17	103	38	0	1	59	1.09
482055--482186	66	2.0	66	88	5	196	37	9	36	17	1.82
483915--483990	21	3.7	20	73	21	68	48	31	10	9	1.69
491562--491605	20	2.3	18	84	11	52	52	0	0	47	1.00
491690--491732	18	2.4	17	82	17	52	55	2	0	41	1.12
491927--491987	29	2.1	29	81	6	70	57	1	0	40	1.08
491927--491987	28	2.1	29	82	8	72	57	1	0	40	1.08
491969--491998	12	2.6	12	94	5	53	53	0	0	46	1.00
491950--491992	18	2.4	17	82	17	52	55	2	0	41	1.12
493233--493330	48	2.0	48	86	0	133	29	7	37	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
493421--493488	30	2.3	30	100	0	136	51	13	29	5	1.64
493460--493501	21	2.0	21	95	0	75	47	11	33	7	1.68
493430--493537	49	2.2	51	89	3	166	50	12	30	6	1.66
502271--502323	21	2.5	22	87	9	83	39	0	9	50	1.35
502342--502400	31	1.9	31	89	0	91	45	8	3	42	1.51
507913--508067	29	5.3	29	97	0	283	24	21	20	34	1.97
521558--521625	20	3.3	20	67	4	55	33	23	17	25	1.96
521619--521686	20	3.3	20	84	10	93	41	26	13	19	1.88
521594--521707	40	2.8	40	84	10	126	40	24	14	20	1.90
521690--521765	19	3.9	19	87	1	107	36	19	11	31	1.88
521938--521975	16	2.5	15	84	12	51	28	5	0	65	1.14
522842--522881	20	2.0	20	85	0	53	15	12	22	50	1.77
523209--523255	22	2.2	22	88	7	71	25	17	36	21	1.94
523348--523485	20	6.8	20	85	4	163	19	16	26	37	1.93
523348--523524	60	2.9	60	79	5	162	20	14	27	37	1.91
523453--523520	20	3.4	20	74	11	59	23	10	29	36	1.88
523869--523940	27	2.7	27	95	0	126	52	5	9	31	1.57
527287--527316	10	3.0	10	100	0	60	20	30	20	30	1.97
528927--528977	2	25.5	2	100	0	102	50	0	0	49	1.00
529767--529836	23	3.1	22	72	10	61	40	1	4	54	1.29
530181--530232	16	3.2	15	78	8	50	65	1	1	30	1.14
531568--531612	23	2.0	23	86	0	63	60	15	13	11	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
532030--532069	21	1.9	21	84	0	53	40	12	2	45	1.56
532086--532115	14	2.1	14	100	0	60	26	13	16	43	1.85
537051--537144	34	2.8	33	85	3	116	35	7	10	46	1.67
539813--539919	51	2.1	51	96	0	196	22	28	13	35	1.92
550295--550334	21	1.9	21	89	0	62	25	42	25	7	1.80
555643--555680	12	2.8	13	88	11	51	57	2	2	36	1.26
564110--564155	21	2.2	21	92	0	74	63	10	0	26	1.27
570772--572649	374	5.0	374	98	0	3641	30	20	16	31	1.95
570772--572649	753	2.5	749	98	0	3643	30	20	16	31	1.95
587152--587198	21	2.2	22	88	3	69	74	10	6	8	1.22
592137--592185	24	2.1	24	92	3	82	30	12	16	40	1.85
592141--592193	23	2.2	24	86	3	72	28	15	15	41	1.87
597937--597964	2	14.0	2	100	0	56	50	0	0	50	1.00
600573--600959	183	2.1	184	92	2	638	43	3	7	45	1.48
602975--603047	30	2.4	30	86	4	94	43	2	8	45	1.48
603248--603276	14	2.1	14	100	0	58	27	20	27	24	1.99
612368--612397	14	2.1	14	100	0	60	20	13	6	60	1.55
614765--614927	77	2.1	76	89	1	245	38	15	11	34	1.84
616210--616296	26	3.4	26	74	15	99	41	3	0	55	1.17
616210--616306	51	1.9	51	89	4	151	44	4	0	51	1.20
616216--616328	51	2.2	51	84	3	138	43	5	1	49	1.35
616314--616355	13	3.3	13	73	6	50	45	0	9	45	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
616314--616365	25	2.1	25	92	0	86	46	0	9	44	1.36
623382--623413	2	16.5	2	93	6	57	53	0	0	46	1.00
642734--642966	75	3.1	75	65	19	210	13	25	13	47	1.79
642711--643027	153	2.1	153	99	0	625	15	24	12	47	1.80
644535--644591	15	3.9	14	72	6	51	64	0	1	33	1.04
647065--647099	10	3.5	10	100	0	70	28	0	20	51	1.47
648364--648425	26	2.4	26	88	0	88	45	22	12	19	1.84
651151--651280	60	2.2	60	82	0	152	38	4	21	35	1.74
660904--660949	21	2.2	20	88	7	65	56	13	0	30	1.37
660911--660949	21	1.9	21	94	5	71	56	15	0	28	1.40
664872--664902	14	2.2	14	100	0	62	38	12	29	19	1.89
668480--668519	21	1.9	21	100	0	80	32	22	25	20	1.98

Tables:   1   2   3

The End!