genome.fa.s8173.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008173.1 Hibiscus syriacus cultivar Beakdansim tig00110764_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  490413

Tables:   1   2   

This is table  2  of  2  ( 225 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
231117--231242	59	2.1	59	81	7	148	52	11	0	34	1.44
231890--231942	27	1.9	27	85	11	72	64	5	5	24	1.38
232986--233030	21	2.1	21	87	0	63	31	28	24	15	1.96
234178--234205	14	2.0	14	100	0	56	28	7	28	35	1.84
234308--234429	63	2.0	62	88	4	183	28	18	19	32	1.96
234305--234432	31	4.1	31	79	6	141	27	17	20	34	1.95
234391--234466	30	2.5	30	82	2	89	19	19	26	34	1.96
234759--234820	2	31.0	2	93	0	106	46	1	1	50	1.20
237675--237719	21	2.1	21	87	0	63	31	28	24	15	1.96
237745--237789	22	2.0	22	86	4	63	31	33	26	8	1.87
238500--238534	16	2.2	17	90	10	56	34	5	22	37	1.78
238880--238907	14	2.0	14	100	0	56	28	7	28	35	1.84
239010--239131	63	2.0	62	88	4	183	28	18	19	32	1.96
239007--239134	31	4.1	31	79	6	141	27	17	20	34	1.95
239093--239166	30	2.4	30	81	2	85	20	18	25	35	1.96
239460--239521	2	31.0	2	93	0	106	46	1	1	50	1.20
241858--241906	25	2.0	25	88	4	73	63	4	8	24	1.40
242306--242336	15	2.1	15	100	0	62	61	19	6	12	1.53
246618--246655	7	5.6	7	87	6	51	78	0	2	18	0.86
247427--247460	14	2.4	14	90	0	50	64	0	35	0	0.94
254719--254784	32	2.3	26	72	27	71	45	18	6	30	1.73
254702--254804	33	3.2	32	90	4	154	45	16	7	30	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254799--254840	21	2.0	21	90	0	66	47	7	16	28	1.73
257117--257160	22	2.0	22	82	4	54	29	15	20	34	1.94
266082--266113	16	2.0	16	93	0	55	28	25	15	31	1.96
266633--266681	19	2.5	20	77	6	57	51	0	2	46	1.12
280145--280182	18	2.2	18	90	4	60	47	0	0	52	1.00
285182--285243	30	2.1	30	100	0	124	61	12	6	19	1.53
285171--285235	16	4.2	16	68	7	53	67	6	6	20	1.34
288131--288156	8	3.2	8	100	0	52	38	0	0	61	0.96
292182--292222	16	2.6	16	84	3	57	31	19	9	39	1.84
301695--301771	3	24.7	3	89	5	109	63	0	0	36	0.95
302019--302079	20	3.2	20	61	25	51	19	18	6	55	1.63
302017--302106	36	2.5	36	96	0	162	21	18	8	51	1.73
302052--302709	113	5.8	113	85	5	868	28	18	14	38	1.90
303390--303714	115	2.8	115	95	0	571	32	21	13	33	1.92
303661--303873	83	2.6	83	92	3	342	38	22	14	25	1.92
305024--305072	1	49.0	1	79	0	53	0	10	0	89	0.48
305024--305075	7	7.1	7	87	8	68	0	11	0	88	0.52
317796--317875	3	25.7	3	82	5	88	60	0	0	40	0.97
319380--319439	22	2.7	22	78	0	75	58	8	5	28	1.48
319528--319721	101	2.0	99	83	8	249	56	19	7	17	1.63
323973--324091	59	2.0	59	98	0	229	26	5	30	37	1.80
327678--327793	60	1.9	60	84	3	153	33	26	0	38	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328717--328863	60	2.5	60	79	10	167	31	18	6	43	1.76
328777--328869	29	3.1	30	71	8	75	32	18	5	44	1.72
335742--335798	29	2.0	29	92	0	96	26	22	33	17	1.96
336082--336124	2	21.5	2	100	0	86	51	0	0	48	1.00
347341--347378	2	19.0	2	94	0	67	47	0	0	52	1.00
351830--352176	172	2.0	172	100	0	694	39	9	12	38	1.76
358668--358712	20	2.2	20	96	0	81	35	33	0	31	1.58
358675--358717	20	2.3	18	88	11	61	32	34	0	32	1.58
363645--363954	152	2.0	154	97	1	588	20	29	12	36	1.90
365226--365267	22	1.9	22	85	9	59	47	14	26	11	1.78
365880--365904	12	2.1	12	100	0	50	48	8	16	28	1.74
366909--366962	28	1.9	28	88	7	83	46	1	1	50	1.23
366909--366968	29	2.0	28	84	9	75	45	3	3	48	1.35
367444--367505	23	2.9	21	84	13	81	9	53	0	37	1.34
368745--368829	34	2.6	33	90	9	138	37	1	0	61	1.04
368745--368859	39	3.2	37	80	13	141	37	1	0	60	1.07
369031--369063	11	3.0	11	100	0	66	18	63	18	0	1.31
382933--383077	70	2.1	70	96	0	263	34	21	17	26	1.95
384831--385201	189	2.0	189	85	2	512	42	14	8	35	1.76
385121--385234	59	1.9	59	83	1	147	43	18	7	29	1.78
389918--390405	20	24.2	20	79	13	465	41	23	19	15	1.89
390501--390527	6	4.5	6	100	0	54	33	51	14	0	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391016--391042	6	4.5	6	100	0	54	0	14	51	33	1.43
391142--391301	20	7.8	20	85	12	218	16	20	26	36	1.94
391135--391380	40	6.1	41	81	13	257	15	19	23	41	1.90
391292--391344	19	2.7	20	88	5	81	11	20	18	49	1.78
391135--391380	20	12.2	20	76	12	141	15	19	23	41	1.90
392294--392335	20	2.2	19	88	12	68	23	28	9	38	1.86
395213--395644	218	2.0	214	98	1	828	43	18	11	26	1.84
396636--396704	30	2.3	30	84	0	93	42	13	7	37	1.71
402113--402150	19	2.1	19	85	9	53	15	23	13	47	1.81
403014--403048	12	2.9	12	86	0	52	85	0	2	11	0.69
409455--409484	2	15.0	2	100	0	60	50	0	0	50	1.00
412229--412273	23	2.0	23	86	8	65	53	2	8	35	1.45
412669--412706	17	2.3	17	95	4	69	31	0	0	68	0.90
430325--430398	33	2.2	33	87	0	103	32	32	14	20	1.93
430325--430707	99	3.9	99	88	0	480	27	33	18	20	1.96
430348--430718	33	11.2	33	81	4	363	27	33	19	19	1.96
430728--430803	33	2.3	32	80	8	82	32	30	14	22	1.94
431628--431833	33	6.2	33	89	0	268	33	16	33	15	1.91
431658--431717	15	3.8	15	72	12	57	36	15	33	15	1.88
431723--431775	15	3.3	15	70	14	52	32	15	33	18	1.92
445803--445845	22	2.0	22	90	0	68	39	0	9	51	1.34
445771--445894	54	2.3	55	94	1	223	37	0	10	51	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445848--445895	22	2.4	18	73	23	51	37	0	10	52	1.36
445825--445972	80	1.9	78	94	2	260	34	0	12	53	1.38
446041--446085	24	1.9	24	95	4	83	35	0	13	51	1.41
446064--446317	32	8.7	32	78	19	295	35	0	11	51	1.42
446120--446172	18	3.2	18	64	20	51	32	0	15	52	1.42
446157--446253	22	4.0	22	71	23	77	37	0	11	51	1.38
445905--446428	54	9.6	54	83	10	665	36	0	11	52	1.40
446256--446312	18	3.4	18	69	18	59	31	1	12	54	1.48
446344--446428	31	3.0	31	68	28	89	38	0	8	52	1.31
446376--446418	22	2.0	22	95	0	77	39	0	6	53	1.28
451002--451322	160	2.0	160	96	3	594	38	19	18	23	1.93
453282--453314	12	2.8	12	95	0	57	54	0	45	0	0.99
471181--471292	35	3.2	35	84	0	143	41	20	0	37	1.59
471288--471362	35	2.1	35	82	4	89	34	0	21	44	1.53
473679--473720	22	1.9	22	95	0	75	69	7	9	14	1.37
474713--474768	26	2.2	25	83	3	67	39	3	3	53	1.36
474942--474997	23	2.3	23	79	11	60	26	3	12	57	1.52

Tables:   1   2

The End!