genome.fa.s8173.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008173.1 Hibiscus syriacus cultivar Beakdansim tig00110764_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  490413

Tables:   1   2   

This is table  1  of  2  ( 225 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1432--1497	33	2.0	33	87	0	96	28	1	45	24	1.62
2715--2772	22	2.6	23	86	2	82	36	6	20	36	1.80
2715--2781	23	3.0	23	80	10	75	34	5	20	38	1.77
8861--8932	35	2.1	35	91	0	117	36	18	9	36	1.83
9225--9280	25	2.2	25	83	3	67	19	5	21	53	1.65
9264--9334	29	2.4	31	83	11	94	28	11	22	38	1.88
9324--9410	33	2.6	33	85	1	120	14	10	32	42	1.80
22013--22104	42	2.2	42	94	0	157	18	17	18	45	1.86
22318--22361	21	2.0	23	82	8	56	45	2	0	52	1.13
22335--22368	17	1.9	18	88	5	52	41	2	0	55	1.15
22350--22460	31	3.7	30	76	13	97	47	0	0	50	1.13
22354--22433	29	2.6	31	82	5	92	47	1	1	50	1.17
22427--22491	28	2.4	27	85	14	98	47	0	1	50	1.10
22423--22517	19	5.0	18	70	11	57	48	2	1	48	1.20
22512--22556	23	2.0	23	86	0	63	53	2	2	42	1.25
22845--22913	34	2.0	34	85	0	93	40	14	7	37	1.74
22885--22943	29	2.0	29	90	0	91	32	15	6	45	1.72
45544--45577	17	2.0	17	100	0	68	35	11	11	41	1.78
48989--49065	6	12.8	6	98	0	136	36	33	12	16	1.88
58294--58331	20	1.9	20	88	0	58	73	2	21	2	1.07
61613--61656	15	2.9	15	83	6	54	43	0	0	56	0.99
61613--61650	16	2.4	16	82	13	51	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61825--61876	21	2.5	21	80	0	59	26	26	21	25	1.99
62161--62195	15	2.3	15	100	0	70	25	14	8	51	1.70
70321--70365	16	2.8	17	83	6	58	42	6	0	51	1.28
74722--74796	37	2.0	38	86	2	107	58	8	5	28	1.48
75511--75585	21	3.6	21	94	0	123	29	25	22	22	1.99
75531--75604	21	3.6	21	89	5	89	32	20	22	24	1.98
75600--75666	21	3.2	21	87	8	109	19	19	31	29	1.96
75794--75911	21	5.7	20	69	12	78	33	21	20	25	1.97
76202--76254	20	2.7	20	94	5	90	49	0	5	45	1.26
76219--76267	20	2.4	20	86	3	62	53	0	4	42	1.20
78918--78970	9	6.0	9	80	2	63	30	0	1	67	1.01
78918--78970	27	2.0	26	85	10	72	30	0	1	67	1.01
93479--93520	21	2.0	20	86	4	57	38	14	7	40	1.73
93522--93560	20	2.0	20	100	0	78	41	15	10	33	1.81
98188--98227	20	2.0	20	100	0	80	40	15	10	35	1.80
101331--101377	7	6.9	7	90	2	69	44	4	0	51	1.21
107493--107965	236	2.0	236	97	0	892	33	21	19	25	1.97
116958--117098	21	6.8	20	84	10	167	23	36	19	21	1.95
119806--119884	21	3.7	21	86	3	95	20	34	20	25	1.96
119872--119945	30	2.4	30	95	2	130	22	31	21	24	1.99
119977--120051	20	3.8	20	89	0	105	20	34	18	26	1.95
131227--131342	21	5.6	21	66	14	62	35	25	18	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131348--131542	20	9.6	20	74	2	165	39	23	17	19	1.92
131348--131544	40	4.9	41	85	1	272	39	23	17	19	1.92
132102--132180	20	3.9	21	86	5	94	51	17	18	11	1.75
132162--132259	14	6.3	14	71	21	70	45	21	22	10	1.81
132157--132273	33	3.5	33	98	0	225	46	20	22	11	1.82
132102--132289	19	10.5	19	72	18	136	47	21	19	11	1.80
132285--132416	19	7.1	19	78	11	130	13	21	19	45	1.85
132302--132332	14	2.2	14	94	0	53	6	19	22	51	1.69
132290--132352	33	1.9	33	96	0	117	11	19	20	49	1.78
132334--132407	20	3.8	18	77	15	67	14	21	21	41	1.89
134112--134491	94	4.1	94	94	1	638	21	12	18	46	1.83
134555--134644	33	2.4	36	78	19	105	46	25	18	8	1.78
134579--134645	19	3.8	19	73	18	81	44	29	19	5	1.74
134687--134735	20	2.5	20	93	0	80	18	18	22	40	1.91
136853--136905	20	2.7	20	91	5	81	43	24	18	13	1.86
136933--137061	40	3.2	40	85	0	150	40	19	17	22	1.91
136933--137083	20	7.6	20	79	4	135	39	18	18	23	1.92
137943--137996	24	2.2	24	90	0	81	20	18	18	42	1.89
140559--140585	14	1.9	14	100	0	54	44	22	18	14	1.86
140544--140649	19	5.7	19	77	14	105	43	20	20	15	1.88
140650--140690	19	2.2	19	90	0	64	14	14	19	51	1.77
140699--140739	19	2.2	19	100	0	82	17	19	17	46	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140704--140747	19	2.3	19	92	0	70	18	20	15	45	1.85
140846--140882	14	2.6	14	86	0	56	45	18	0	35	1.50
142275--142354	42	1.9	42	84	0	106	22	17	38	21	1.93
142549--142910	94	3.9	94	94	1	609	47	17	12	22	1.81
144603--144658	20	2.8	20	78	10	69	41	19	23	16	1.90
144594--144715	33	3.5	33	83	7	136	45	18	22	13	1.84
144716--144823	20	5.5	19	84	3	99	12	17	19	50	1.76
144727--144820	40	2.3	40	85	8	129	12	19	18	50	1.78
144733--144823	20	4.6	20	82	9	114	13	17	18	50	1.78
145359--145568	20	10.4	20	73	8	183	20	18	23	37	1.94
145361--145568	41	5.1	41	88	1	285	20	18	23	37	1.94
145359--145568	61	3.4	59	76	8	181	20	18	23	37	1.94
145581--145633	20	2.7	20	88	5	72	15	18	22	43	1.87
145842--145877	14	2.6	14	90	0	54	30	0	22	47	1.52
145979--146074	33	2.9	34	90	3	149	42	20	22	13	1.87
146012--146079	19	3.8	19	72	21	74	45	19	22	13	1.84
146083--146292	19	11.3	19	77	13	206	15	20	18	45	1.85
146067--146144	39	2.0	39	82	0	93	19	21	16	42	1.89
146168--146251	34	2.5	35	84	9	111	14	21	20	44	1.86
146109--146314	86	2.3	87	83	5	245	16	21	18	44	1.87
146291--146379	20	4.4	20	80	2	108	21	20	22	35	1.96
146130--146334	106	1.9	106	80	9	240	17	20	18	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146286--146379	40	2.3	40	87	3	127	21	20	21	37	1.95
148794--148845	24	2.2	24	82	0	59	36	21	19	23	1.95
149691--149862	20	8.6	19	80	8	175	19	18	23	38	1.93
149691--149870	40	4.5	39	86	7	211	20	18	22	38	1.93
149941--150015	20	3.7	20	72	15	64	20	20	25	34	1.96
160494--160633	70	2.0	70	90	0	217	20	22	13	43	1.87
160710--160784	30	2.5	30	80	6	89	14	25	8	52	1.69
164671--164726	23	2.5	23	85	2	69	32	32	16	19	1.94
164694--164734	17	2.3	18	87	4	66	34	29	14	21	1.93
164760--164786	2	13.5	2	100	0	54	48	0	0	51	1.00
164783--164821	19	2.0	20	85	5	53	58	0	0	41	0.98
164781--164846	29	2.3	28	77	12	71	56	0	0	43	0.99
172739--172809	34	2.1	34	100	0	142	42	19	14	23	1.88
174022--174075	27	2.0	27	100	0	108	22	25	11	40	1.87
184875--184919	21	2.1	21	87	0	63	31	28	24	15	1.96
186008--186062	2	28.0	2	96	3	103	49	0	0	50	1.00
186433--186535	22	4.6	22	97	1	188	18	27	29	25	1.98
189580--189623	20	2.1	21	87	4	63	29	29	25	15	1.96
190193--190227	18	1.9	18	88	11	54	54	5	17	22	1.64
190700--190737	2	20.0	2	89	10	62	50	0	0	50	1.00
190694--190737	13	3.3	13	93	3	70	50	0	2	47	1.13
190703--190735	11	3.0	11	95	0	57	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191114--191176	13	5.5	13	65	27	52	19	26	26	26	1.99
191110--191210	22	4.6	22	93	4	170	18	27	28	24	1.98
192398--192536	67	2.1	67	94	2	244	37	13	4	44	1.64
192519--192589	2	36.5	2	94	5	128	50	0	0	49	1.00
193165--193211	23	2.1	23	88	4	69	31	38	12	17	1.87
194619--194713	47	2.0	47	95	0	172	5	15	20	58	1.56
201602--201672	33	2.2	33	97	0	133	54	11	9	23	1.65
204191--204255	25	2.6	24	80	4	76	29	12	10	47	1.75
217312--217338	6	4.5	6	100	0	54	62	0	37	0	0.95
227346--227432	35	2.5	34	80	12	97	54	10	8	27	1.62

Tables:   1   2