genome.fa.s8175.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008175.1 Hibiscus syriacus cultivar Beakdansim tig00110770_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  426378

Tables:   1   2   

This is table  2  of  2  ( 178 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271939--271997	30	2.0	30	86	6	84	33	15	8	42	1.77
275441--275796	178	2.0	178	98	1	696	35	8	15	39	1.79
281336--281492	21	7.8	20	72	7	84	38	24	17	19	1.92
281459--281702	20	12.2	20	81	6	228	36	24	18	20	1.94
292217--292248	16	1.9	17	93	6	57	87	0	12	0	0.54
292216--292252	12	3.0	13	84	11	51	86	0	13	0	0.57
292561--292605	16	2.8	16	83	10	56	28	8	6	55	1.56
293344--294314	166	5.9	166	96	1	1725	28	13	22	36	1.91
293344--294314	83	11.7	83	91	1	1540	28	13	22	36	1.91
294965--295604	113	5.6	113	90	3	901	37	13	20	28	1.91
294965--295604	227	2.8	225	88	3	899	37	13	20	28	1.91
295741--295820	3	26.7	3	87	5	117	36	2	0	61	1.10
295810--295842	14	2.3	15	94	5	59	63	0	0	36	0.95
298591--298652	28	2.2	28	100	0	124	48	3	6	41	1.45
299450--299525	24	3.2	24	76	0	80	47	17	15	19	1.83
315286--315346	31	2.0	31	93	0	104	36	13	26	24	1.92
317165--317207	19	2.2	20	83	8	52	58	2	4	34	1.32
327646--327683	3	12.3	3	84	15	51	36	34	0	28	1.58
337372--337441	34	2.1	34	100	0	140	50	8	11	30	1.68
338718--338792	26	2.8	27	76	10	73	50	4	2	42	1.35
338451--338978	263	2.0	266	96	3	987	47	11	6	34	1.65
340148--340218	32	2.2	33	84	5	99	60	2	12	23	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343420--343455	2	18.0	2	100	0	72	50	0	0	50	1.00
349033--349072	21	1.9	21	84	0	53	47	7	2	42	1.45
349151--349187	17	2.1	18	90	5	58	59	18	10	10	1.59
357112--357154	22	2.0	21	95	4	77	51	13	0	34	1.42
363994--364045	26	2.0	26	100	0	104	19	19	34	26	1.95
364465--364556	45	2.0	46	83	10	118	48	13	4	33	1.61
364727--364933	108	1.9	109	93	6	359	44	23	15	15	1.85
365829--365869	20	2.0	21	95	4	75	34	21	19	24	1.97
367084--367146	33	1.9	33	96	0	117	42	0	7	49	1.32
367097--367152	17	3.4	17	66	14	53	46	0	8	44	1.34
372653--372704	16	2.8	20	72	25	58	30	11	17	40	1.85
376623--376669	21	2.2	22	85	11	62	27	8	2	61	1.36
378764--378792	2	14.5	2	100	0	58	48	0	0	51	1.00
393547--393670	64	1.9	64	83	6	162	37	20	17	25	1.94
394722--394769	15	3.2	15	84	0	60	41	0	18	39	1.51
395197--395256	23	2.6	23	94	0	102	18	28	28	25	1.98
406640--406815	91	1.9	91	94	0	307	48	7	8	35	1.62
407249--407309	2	30.5	2	100	0	122	50	0	0	49	1.00
409783--409839	24	2.4	23	82	5	60	40	0	1	57	1.09
417168--417212	2	22.5	2	95	0	81	46	2	0	51	1.13
417808--417843	14	2.5	15	90	9	65	38	0	0	61	0.96
417823--417974	32	5.4	32	69	28	146	34	0	11	53	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417846--417888	22	2.0	22	95	0	77	32	0	16	51	1.45
417945--418123	22	6.8	24	68	22	96	30	0	16	52	1.44
418001--418084	31	2.7	32	94	5	154	34	0	14	51	1.43
418117--418229	52	2.2	52	84	9	144	38	0	11	50	1.39
418038--418344	128	2.4	131	91	4	516	35	0	13	50	1.42
418269--418314	22	2.1	22	100	0	92	36	0	13	50	1.41
418291--418408	32	3.7	32	96	1	209	36	0	11	52	1.37
418313--418403	18	5.5	18	66	19	72	35	0	10	53	1.36
418239--418488	112	2.2	113	88	8	357	35	0	12	51	1.40
418514--418709	32	6.0	32	69	23	149	32	0	14	53	1.42
418613--418670	18	3.4	18	65	18	52	32	0	12	55	1.37
418621--418729	57	1.9	58	83	9	143	30	0	15	54	1.42
424901--424935	7	5.0	7	85	0	52	22	20	28	28	1.98
424901--424935	14	2.5	14	100	0	70	22	20	28	28	1.98

Tables:   1   2

The End!