genome.fa.s8181.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008181.1 Hibiscus syriacus cultivar Beakdansim tig00110781_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  428138

Tables:   1   2   

This is table  2  of  2  ( 204 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270656--270726	24	2.8	24	77	12	72	69	1	18	11	1.26
277572--277621	24	2.1	24	85	7	66	60	12	2	26	1.43
288809--288861	27	2.0	27	96	0	97	30	24	22	22	1.99
294706--294739	16	2.2	16	89	5	52	26	5	17	50	1.69
300452--300511	30	2.1	29	84	6	77	43	18	3	35	1.67
300460--300529	30	2.2	32	75	19	74	51	17	4	27	1.63
300470--300528	30	2.0	30	86	6	84	47	20	5	27	1.71
300601--300643	21	2.0	21	90	0	68	25	13	23	37	1.92
306494--306523	15	1.9	16	93	6	53	46	0	3	50	1.18
312897--312984	12	6.9	12	73	19	56	39	2	1	56	1.19
312943--312989	3	15.0	3	86	8	67	38	0	0	61	0.96
314278--314343	26	2.6	25	71	21	64	43	3	3	50	1.33
314260--314343	18	4.8	18	75	23	56	42	3	3	50	1.37
320406--320437	5	6.2	5	96	3	55	0	18	56	25	1.42
321048--321155	55	1.9	56	90	1	173	35	6	23	35	1.80
321849--321951	41	2.5	41	87	3	145	24	21	21	33	1.97
321981--322022	20	2.2	19	87	8	59	40	9	26	23	1.85
322173--322247	37	2.0	37	82	10	91	48	5	1	45	1.33
329772--329802	16	1.9	16	93	0	53	54	16	9	19	1.68
331882--331926	23	2.0	23	86	0	63	40	0	0	60	0.97
334247--334286	21	1.9	21	89	0	62	37	15	17	30	1.90
334654--334680	14	1.9	14	100	0	54	33	0	14	51	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335263--335308	23	2.1	23	84	8	60	52	6	6	34	1.53
335865--335949	32	2.7	31	75	15	84	27	31	28	12	1.93
338364--338417	22	2.5	22	90	0	90	33	27	24	14	1.94
338441--338467	13	2.1	13	100	0	54	33	7	22	37	1.82
345898--345932	18	1.9	18	88	11	54	71	0	17	11	1.14
351420--351450	6	5.2	6	100	0	62	19	48	0	32	1.49
352012--352072	29	2.1	29	82	8	72	34	8	4	52	1.53
352032--352087	29	2.0	29	85	3	78	32	12	3	51	1.56
352210--352287	29	2.7	29	79	0	93	43	5	20	30	1.73
352366--352449	40	2.1	40	97	0	159	44	9	7	39	1.65
353110--353182	30	2.4	30	93	0	119	43	8	43	4	1.53
358629--358659	11	2.8	11	95	0	53	87	0	0	12	0.55
371862--372304	221	2.0	222	95	1	809	34	13	20	31	1.91
373046--373130	24	3.5	24	76	6	82	43	18	11	25	1.84
374676--374726	20	2.5	20	83	0	66	37	19	25	17	1.94
374797--374855	19	2.9	21	75	10	68	33	27	15	23	1.95
375165--375212	19	2.5	20	89	3	71	16	18	27	37	1.92
375165--375222	20	3.0	20	87	2	73	15	18	22	43	1.88
375357--375412	25	2.2	24	79	14	60	19	8	17	53	1.70
376523--376567	18	2.5	18	88	0	72	26	44	15	13	1.83
377049--377094	20	2.3	20	84	0	56	36	23	21	17	1.94
377060--377104	20	2.3	20	84	3	65	37	20	24	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377088--377151	19	3.7	18	72	20	64	45	20	20	14	1.85
377163--377252	14	5.8	14	74	21	81	11	17	23	47	1.79
377158--377269	33	3.4	33	96	1	199	11	18	23	46	1.82
377254--377309	20	2.8	19	86	7	76	16	25	23	35	1.94
379114--379152	14	2.8	14	84	0	51	35	0	17	46	1.49
379288--379355	19	3.8	19	79	14	83	48	16	20	14	1.81
379345--379398	19	2.8	19	97	0	99	16	22	16	44	1.86
379345--379470	40	3.4	39	75	13	129	17	19	19	43	1.88
379406--379468	20	3.2	20	71	8	65	19	20	20	39	1.92
379679--379790	20	5.5	20	73	5	73	24	18	18	38	1.93
379759--379821	20	3.1	20	79	2	63	28	20	15	34	1.94
380578--380624	24	2.0	24	91	0	76	23	19	21	36	1.95
383101--383184	19	4.7	19	81	14	115	45	19	22	13	1.84
383180--383254	19	4.2	19	75	16	70	14	21	21	42	1.88
383211--383255	19	2.4	19	96	0	81	13	20	20	46	1.83
383363--383399	14	2.6	14	91	0	65	45	24	0	29	1.53
385090--385274	91	2.0	90	90	6	291	47	18	11	22	1.81
387005--387060	14	3.6	14	74	21	58	39	25	25	10	1.87
386981--387079	33	3.0	33	95	1	171	40	23	25	11	1.87
386956--387134	19	10.1	18	72	20	130	43	20	24	11	1.85
387018--387134	52	2.2	52	95	0	207	43	22	23	11	1.84
387130--387174	19	2.4	19	88	0	63	8	17	26	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387729--387800	20	3.5	20	83	5	74	20	20	22	36	1.96
387790--387862	21	3.5	21	75	7	69	35	17	21	24	1.95
387954--387994	21	2.0	21	85	0	55	34	29	17	19	1.94
395252--395399	60	2.5	60	85	4	183	32	20	6	40	1.78
402664--402754	20	4.9	20	68	20	72	34	5	15	45	1.69
402663--402812	53	2.9	52	96	3	275	32	6	13	48	1.67
402769--402808	20	2.0	20	95	0	71	37	5	12	45	1.64
406815--406861	20	2.3	20	100	0	94	34	23	21	21	1.97
407270--407309	20	2.0	21	90	5	64	35	5	15	45	1.68
407238--407366	53	2.5	52	94	3	233	31	6	13	48	1.66
407323--407362	20	2.0	20	95	0	71	37	5	12	45	1.64
417998--418086	45	2.0	45	84	4	117	17	28	15	38	1.91
418058--418216	42	3.8	42	75	11	132	17	30	13	38	1.88
418019--418256	84	2.8	87	82	4	261	18	29	12	39	1.88
418010--418250	45	5.6	44	73	13	187	17	29	12	39	1.87
418176--418277	45	2.3	46	78	11	113	15	24	13	46	1.82
423803--423867	23	3.0	21	80	14	69	46	0	3	50	1.17
423988--424049	26	2.4	26	81	10	74	48	0	6	45	1.28

Tables:   1   2

The End!