genome.fa.s8186.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008186.1 Hibiscus syriacus cultivar Beakdansim tig00110793_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  806808

Tables:   1   2   3   

This is table  2  of  3  ( 295 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424456--424861	110	3.7	110	86	2	521	31	23	16	28	1.96
424525--424847	55	5.9	55	89	2	497	32	23	16	27	1.96
424847--424928	37	2.2	37	89	4	121	19	19	18	42	1.89
425697--425741	23	2.0	23	86	0	63	26	26	26	20	1.99
425858--425924	25	2.7	25	97	0	125	26	26	26	19	1.99
428324--428461	28	4.7	28	89	9	140	13	13	0	73	1.09
428334--428443	7	15.7	7	93	5	179	12	12	0	74	1.07
428341--428461	21	6.1	20	85	10	126	14	11	0	74	1.08
428322--428467	14	10.4	13	80	12	96	12	13	0	74	1.07
438487--438529	21	2.0	21	86	0	59	30	27	25	16	1.97
438509--438656	65	2.3	66	89	3	219	30	27	24	17	1.97
439271--439315	23	2.0	23	86	0	63	20	24	28	26	1.99
445413--445561	66	2.2	67	87	6	214	30	26	25	17	1.97
446178--446222	23	2.0	23	86	0	63	20	24	28	26	1.99
459163--459203	19	2.2	19	100	0	82	34	7	17	41	1.77
471181--471211	14	2.2	14	94	0	53	6	19	22	51	1.69
471189--471238	14	3.6	14	86	0	73	14	16	16	54	1.72
472627--472713	20	4.3	20	89	0	138	25	28	22	22	1.99
472627--472713	40	2.2	40	95	0	156	25	28	22	22	1.99
473334--473427	20	4.7	20	91	0	134	14	17	24	43	1.86
475341--475408	20	3.4	20	91	0	100	38	25	20	16	1.92
475451--475497	20	2.5	19	89	6	69	14	19	27	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
475988--476029	21	2.2	20	87	12	61	21	33	19	26	1.97
476234--476271	19	2.0	20	84	5	51	47	0	0	52	1.00
476224--476320	32	3.0	32	77	10	92	52	0	0	47	1.00
476342--476376	12	2.9	12	91	0	52	28	48	11	11	1.74
478189--478242	20	2.7	20	85	0	72	44	25	18	11	1.83
478285--478543	20	13.9	20	71	15	178	26	18	21	33	1.96
478305--478481	74	2.4	74	85	7	243	26	18	21	33	1.96
478245--478447	94	2.2	94	88	1	291	25	19	21	33	1.97
478419--478515	34	2.8	35	87	3	135	24	15	23	36	1.94
478326--478531	54	3.8	54	73	17	194	25	17	22	34	1.96
478514--478783	140	1.9	140	98	0	522	42	15	13	28	1.85
478843--478877	18	1.9	18	94	0	61	17	2	25	54	1.57
481131--481184	24	2.2	24	86	0	72	40	18	16	24	1.90
482006--482067	20	3.0	20	83	4	70	32	19	22	25	1.97
483391--483473	40	2.1	40	100	0	166	32	12	16	38	1.86
485750--485869	42	2.9	42	97	0	222	15	19	20	45	1.85
486060--486272	23	9.1	23	67	22	65	49	1	1	47	1.18
486052--486165	31	3.8	31	70	21	91	47	0	0	50	1.13
486082--486213	59	2.1	64	82	12	159	47	1	1	49	1.20
486164--486219	28	2.0	29	85	3	78	50	1	1	46	1.22
486177--486229	20	2.7	19	73	18	54	49	0	1	49	1.12
486070--486217	60	2.5	57	79	12	145	49	1	1	47	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
486613--486655	14	3.0	14	73	6	50	34	20	4	39	1.74
486599--486637	20	2.0	20	84	0	51	33	17	7	41	1.79
486612--486654	15	2.9	15	75	3	52	34	20	2	41	1.65
489603--489678	18	4.3	18	70	14	59	38	1	2	57	1.21
491873--491910	3	12.3	3	94	5	67	65	2	0	31	1.06
493247--493305	15	4.1	15	74	22	63	59	5	27	8	1.48
493520--493627	42	2.7	40	85	5	146	19	13	15	50	1.77
493766--493857	24	3.9	23	71	19	66	51	2	0	46	1.13
493830--493986	28	5.7	27	70	24	98	45	0	1	51	1.16
493837--493922	23	3.4	23	72	27	77	46	1	2	50	1.21
493893--493995	28	3.6	28	79	16	106	46	0	1	50	1.19
493980--494041	23	2.6	23	84	5	70	51	4	3	40	1.39
494320--494367	20	2.4	20	89	0	78	33	12	10	43	1.77
494352--494411	15	4.0	15	74	8	50	35	16	3	45	1.64
498669--498706	18	2.2	18	85	4	51	5	26	7	60	1.46
505036--505078	20	2.3	18	84	11	52	27	27	6	37	1.83
507156--507214	23	2.6	23	88	0	91	30	28	23	16	1.97
513850--513917	34	2.0	34	97	0	127	36	29	16	17	1.92
518349--518376	2	14.0	2	100	0	56	50	0	0	50	1.00
520256--520311	28	2.0	29	85	3	78	44	7	19	28	1.77
542643--542683	21	2.0	21	90	0	64	43	0	12	43	1.41
542810--542842	17	2.1	17	88	11	52	21	6	0	72	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
543085--543462	186	2.0	185	92	1	623	43	3	7	46	1.47
544856--544914	23	2.6	23	86	5	75	50	0	1	47	1.11
549224--549295	37	1.9	38	86	8	103	41	6	12	38	1.70
550632--550661	6	4.8	6	92	8	51	16	0	0	83	0.65
550632--550661	13	2.4	13	94	5	53	16	0	0	83	0.65
555779--555812	15	2.3	15	89	0	50	20	26	2	50	1.63
559177--559296	42	2.9	42	94	0	204	17	20	17	45	1.86
559485--559545	22	2.8	23	82	7	65	47	0	0	52	1.00
559511--559613	54	1.9	52	84	11	138	48	0	0	49	1.14
559558--559662	30	3.6	28	76	20	99	43	0	1	53	1.18
559828--559917	20	4.5	20	97	0	162	36	13	10	40	1.78
559900--559970	30	2.4	30	95	2	126	32	16	7	43	1.75
559900--559970	15	4.8	15	78	3	90	32	16	7	43	1.75
565921--565958	19	2.0	19	100	0	76	47	21	10	21	1.80
570000--570024	13	1.9	13	100	0	50	32	0	20	48	1.50
589969--590169	99	2.0	99	99	0	393	33	10	20	34	1.88
593048--593082	18	1.9	18	94	0	61	40	14	2	42	1.60
599263--599309	18	2.7	18	80	3	51	34	10	25	29	1.90
599667--600190	226	2.3	222	86	8	718	41	17	12	28	1.86
601456--601486	12	2.7	12	95	5	55	61	0	0	38	0.96
602131--602157	4	6.8	4	100	0	54	51	0	25	22	1.48
615074--615117	21	2.1	21	86	0	61	43	4	4	47	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
616591--616811	64	3.5	64	83	2	239	33	20	18	27	1.96
617114--617149	12	3.0	12	91	0	63	33	5	25	36	1.79
617114--617182	24	2.8	26	83	12	85	37	5	24	31	1.79
617297--617326	15	2.0	15	100	0	60	13	20	33	33	1.91
623535--623743	64	3.3	64	83	2	242	34	20	17	26	1.95
624051--624086	12	3.0	12	91	0	63	33	5	25	36	1.79
624051--624119	24	2.8	26	83	12	85	37	5	24	31	1.79
624231--624263	15	2.2	15	100	0	66	15	18	33	33	1.92
627534--627572	20	2.0	19	85	5	51	58	0	0	41	0.98
627734--627778	18	2.5	18	92	0	72	22	26	13	37	1.91
628250--628329	27	3.3	24	81	13	92	31	16	15	37	1.89
628597--628625	6	5.0	6	95	4	51	17	34	31	17	1.93
629941--629979	17	2.3	17	81	0	51	58	7	2	30	1.39
630210--630238	2	14.5	2	100	0	58	51	0	0	48	1.00
643637--643706	36	1.9	36	88	0	104	42	7	10	40	1.66
656029--656062	13	2.6	13	90	0	50	70	8	2	17	1.25
664461--664491	12	2.5	13	94	5	55	48	0	0	51	1.00
664503--664559	25	2.1	29	84	12	77	52	3	0	43	1.18
667087--667114	4	7.0	4	100	0	56	25	0	0	75	0.81
668456--668551	28	3.4	28	66	11	77	27	4	13	55	1.57
669051--669087	19	1.9	19	94	0	65	32	29	16	21	1.95
669113--669204	20	4.6	20	78	5	87	30	21	20	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
669370--669427	22	2.7	22	77	15	68	20	39	13	25	1.90
669795--669882	20	4.4	20	78	2	88	21	19	21	37	1.94
669810--669885	39	1.9	39	83	0	98	18	18	22	40	1.91
669810--669888	20	4.0	20	78	3	97	17	18	22	40	1.91
671305--671380	21	3.6	21	73	7	73	21	39	18	21	1.93
672807--672868	14	4.3	14	75	6	61	35	0	16	48	1.46
672967--673020	20	2.7	20	80	5	65	42	25	18	12	1.86
673014--673193	94	1.9	93	84	3	236	27	18	20	33	1.96
673063--673193	20	6.8	20	78	10	130	28	19	20	32	1.97
673168--673446	140	2.0	140	96	0	513	43	14	12	29	1.82

Tables:   1   2   3