genome.fa.s8188.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008188.1 Hibiscus syriacus cultivar Beakdansim tig00110796_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  349969

Tables:   1   2   

This is table  2  of  2  ( 177 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217494--217582	23	4.0	23	82	5	92	17	29	23	29	1.97
217522--217597	21	3.5	22	82	8	84	14	26	26	32	1.94
226586--226640	25	2.2	26	83	3	67	60	5	0	34	1.20
227379--227626	107	2.3	106	82	10	290	43	2	7	46	1.46
227341--227657	36	8.9	36	74	17	215	45	2	6	45	1.44
239974--240020	14	3.4	14	93	0	76	25	40	27	6	1.80
240026--240082	10	5.4	10	74	12	51	26	26	40	7	1.81
240002--240086	33	2.6	33	92	0	134	25	28	37	8	1.85
240130--240233	23	4.7	23	90	3	142	11	35	28	24	1.90
240201--240254	10	5.4	10	79	16	67	9	27	37	25	1.87
240131--240254	23	5.7	21	89	6	108	11	33	29	25	1.90
240319--240391	29	2.5	30	86	4	103	13	24	38	23	1.91
241548--241599	22	2.4	22	100	0	104	25	9	7	57	1.57
242730--242880	77	2.0	77	90	0	239	37	21	14	27	1.92
242726--242880	39	4.0	39	88	1	231	37	21	14	26	1.92
249270--249320	21	2.4	21	78	12	52	37	3	1	56	1.29
251528--251568	21	2.0	21	85	0	55	43	4	14	36	1.67
253318--253350	2	16.5	2	100	0	66	48	0	0	51	1.00
253872--254130	42	6.1	43	77	7	203	37	18	20	23	1.94
253935--254094	85	1.9	86	85	3	225	35	18	22	23	1.96
253942--254129	85	2.2	86	79	6	213	37	18	19	25	1.94
256246--256280	3	11.7	3	88	11	54	37	0	28	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
256653--256706	28	1.9	28	88	7	83	55	11	11	22	1.66
256735--256774	2	20.0	2	100	0	80	50	0	0	50	1.00
269185--269272	42	2.0	43	93	4	151	48	6	6	37	1.56
281228--281413	93	2.0	93	93	2	320	17	22	30	30	1.97
283687--283792	49	2.2	49	86	6	144	47	6	15	31	1.71
283993--284034	14	3.2	13	80	13	50	54	23	0	21	1.44
285291--285362	38	1.9	37	85	2	99	41	30	6	20	1.79
294228--294259	2	16.0	2	100	0	64	50	0	0	50	1.00
295066--295138	34	2.1	34	82	5	85	26	32	8	32	1.86
301710--301741	3	10.7	3	100	0	64	34	0	0	65	0.93
302981--303052	16	4.5	16	72	6	65	15	16	20	47	1.83
304257--304307	6	8.5	6	95	0	75	0	9	49	41	1.36
304257--304318	12	5.3	12	88	5	83	0	9	48	41	1.36
304257--304319	18	3.6	18	87	4	85	0	9	47	42	1.36
304257--304319	6	10.5	6	92	0	72	0	9	47	42	1.36
304317--304341	4	6.2	4	100	0	50	24	0	24	52	1.48
311329--311478	30	5.0	30	85	1	210	24	27	15	33	1.95
311331--311478	61	2.5	60	90	1	233	24	27	15	32	1.95
317627--317665	16	2.5	15	92	8	69	33	25	5	35	1.78
318072--318130	23	2.6	23	83	2	75	61	15	10	13	1.57
318079--318200	23	5.5	23	73	9	92	59	14	9	16	1.61
318410--318456	23	2.0	23	87	0	67	53	19	12	14	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321523--321602	29	2.7	29	74	18	74	51	8	10	30	1.66
322868--323121	20	12.6	20	76	9	167	39	20	21	18	1.93
322973--323119	58	2.4	59	86	7	199	36	19	23	21	1.95
323209--323265	6	9.5	6	100	0	114	33	50	15	0	1.44
323951--324037	6	14.5	6	100	0	174	0	16	50	33	1.45
324147--324357	20	10.4	20	88	5	307	23	24	16	36	1.94
324392--324445	20	2.7	20	94	0	90	11	18	18	51	1.74
324432--324482	19	2.6	20	90	3	77	15	17	23	43	1.88
327768--327819	13	3.8	13	72	7	50	30	1	1	65	1.14
328163--328195	12	2.6	13	85	9	50	63	0	0	36	0.95
333979--334141	81	2.0	81	100	0	326	44	13	15	25	1.84
339116--339142	12	2.2	12	100	0	54	37	11	22	29	1.89
341283--341312	15	2.0	15	93	0	51	13	23	46	16	1.82

Tables:   1   2

The End!