genome.fa.s8189.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008189.1 Hibiscus syriacus cultivar Beakdansim tig00110797_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63952

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6745--6786	22	1.9	22	90	0	66	33	0	21	45	1.52
7133--7193	3	21.0	3	77	12	56	27	4	1	65	1.22
7126--7188	29	2.2	30	85	8	94	25	6	3	65	1.32
7230--7261	11	2.9	11	100	0	64	37	43	18	0	1.51
9258--9291	17	1.9	18	88	5	52	38	2	2	55	1.30
10760--10821	32	2.0	32	96	3	117	14	14	9	61	1.57
13134--13211	26	3.2	25	67	22	76	24	23	10	42	1.85
13149--13223	20	3.5	20	70	20	62	26	25	10	37	1.89
13831--13868	11	3.4	11	89	7	58	71	10	13	5	1.30
15518--15587	36	2.0	34	83	5	86	32	15	10	41	1.81
15377--15768	196	2.0	198	90	4	623	31	15	11	41	1.83
15713--15832	35	3.3	36	79	12	120	35	16	11	36	1.85
15935--16016	36	2.3	36	77	8	87	36	18	13	31	1.89
16545--16639	28	3.5	27	83	9	113	28	9	14	47	1.76
16540--16654	54	2.1	55	79	9	128	29	8	13	47	1.73
16735--16799	28	2.3	28	92	5	105	27	6	18	47	1.72
16787--16903	37	3.4	37	68	20	115	29	12	12	44	1.80
16754--16977	67	3.4	65	85	6	276	29	11	13	45	1.79
17062--17179	63	1.9	62	87	8	177	28	18	11	41	1.85
17317--17529	46	4.9	45	75	11	196	24	31	19	23	1.98
17260--17563	128	2.4	129	85	3	432	24	32	19	24	1.98
17717--17777	3	21.0	3	77	12	56	27	4	1	65	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17710--17772	29	2.2	30	85	8	94	25	6	3	65	1.32
17813--17844	11	2.9	11	100	0	64	37	43	18	0	1.51
19853--19886	17	1.9	18	88	5	52	38	2	2	55	1.30
29139--29202	32	2.0	33	81	9	78	51	0	1	46	1.10
32976--33051	39	1.9	39	94	0	134	23	14	26	35	1.93
34250--34308	26	2.3	25	93	0	73	37	16	0	45	1.48
41590--41618	15	1.9	15	100	0	58	13	44	27	13	1.82
44156--44181	11	2.4	11	100	0	52	50	7	0	42	1.31
44230--44274	17	2.7	16	80	10	54	42	0	2	55	1.12
47169--47349	59	3.1	59	86	2	220	33	18	18	29	1.95
47808--47841	2	17.0	2	100	0	68	50	0	0	50	1.00
49379--49430	23	2.2	25	82	6	63	48	3	0	48	1.20
51095--51161	19	3.6	18	78	9	71	34	5	2	56	1.39
57265--57304	21	1.9	21	100	0	80	50	0	17	32	1.47
57564--57625	31	2.1	30	90	6	99	46	17	8	27	1.76
58939--58972	16	2.0	18	88	11	54	26	2	5	64	1.30
59435--59667	123	1.9	126	87	6	350	34	12	16	36	1.87
59435--59683	124	2.0	124	85	7	337	36	12	15	36	1.85
60053--60127	34	2.2	35	92	2	125	34	1	24	40	1.64
61025--61077	2	27.5	2	86	7	74	47	0	3	49	1.19
61023--61077	19	3.1	17	82	7	56	45	1	3	49	1.30
61501--61812	64	5.0	64	89	6	455	39	8	5	46	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62178--62242	24	2.8	23	76	4	76	26	16	15	41	1.88

Tables:   1

The End!