genome.fa.s8197.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008197.1 Hibiscus syriacus cultivar Beakdansim tig00110816_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  560007

Tables:   1   2   

This is table  2  of  2  ( 228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239282--239356	37	2.0	37	92	5	125	18	18	22	40	1.92
239393--239719	57	5.7	57	91	0	483	27	14	21	37	1.92
239222--239719	114	4.4	114	76	8	500	27	14	21	36	1.92
240918--240960	16	2.5	17	85	7	52	41	0	2	55	1.12
241864--241985	40	3.0	40	100	0	244	41	2	4	50	1.37
247058--247109	24	2.2	24	82	6	61	61	3	7	26	1.41
247168--247275	29	3.7	29	70	19	80	42	4	19	33	1.72
247166--247331	60	2.8	59	79	6	181	46	4	15	32	1.67
256892--256929	2	19.0	2	100	0	76	50	0	0	50	1.00
257197--257293	29	3.3	29	98	0	185	46	3	34	16	1.63
288886--288923	2	19.0	2	88	0	58	52	2	0	44	1.14
291119--291170	16	3.6	14	82	12	52	23	9	9	57	1.60
296751--296916	42	4.0	42	87	0	233	32	17	23	26	1.97
297021--297085	28	2.3	28	97	0	121	23	27	18	30	1.97
297505--297570	30	2.2	30	86	8	98	48	10	4	36	1.58
299429--299471	22	2.0	22	100	0	86	34	23	4	37	1.76
300966--301022	28	2.0	28	83	6	71	33	17	14	35	1.90
308120--308181	21	2.9	21	82	4	79	48	19	20	11	1.79
308566--308649	29	2.9	29	83	0	96	19	39	27	14	1.90
308724--308808	29	2.9	29	94	3	145	10	34	35	20	1.87
308793--308825	17	1.9	17	93	0	57	18	21	45	15	1.85
309669--309755	45	1.9	45	90	0	138	35	24	27	12	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309669--309776	45	2.4	45	85	0	135	38	20	29	11	1.87
343272--343561	144	2.0	144	98	0	562	31	13	25	30	1.94
345869--345910	18	2.4	17	88	11	66	54	4	4	35	1.42
347391--347428	4	9.5	4	83	11	51	28	0	2	68	1.03
371301--371342	16	2.7	16	82	14	52	52	0	4	42	1.22
371346--371370	12	2.1	12	100	0	50	24	0	8	68	1.16
395660--395750	39	2.4	36	89	5	128	27	8	21	41	1.83
395736--395969	36	6.6	36	76	14	211	39	14	20	26	1.90
395770--395956	102	1.8	102	83	8	247	39	13	19	27	1.89
396033--396221	37	5.4	37	70	16	141	40	13	18	27	1.88
396006--396245	102	2.4	102	91	0	390	37	12	18	31	1.89
396154--396332	87	2.1	87	94	0	313	35	12	18	32	1.89
396052--396437	189	2.0	189	85	3	508	38	12	18	30	1.88
396589--396836	106	2.3	106	87	0	343	22	20	23	32	1.98
397475--397587	32	3.5	32	83	8	140	36	19	14	30	1.91
398514--398651	69	2.0	69	88	0	204	23	14	24	36	1.93
398724--398775	21	2.5	21	77	0	59	1	17	5	75	1.10
398723--398761	13	3.0	13	85	7	53	5	15	2	76	1.06
401891--401923	16	2.1	16	100	0	66	48	15	0	36	1.45
410362--410389	2	14.0	2	100	0	56	50	0	50	0	1.00
416760--416785	13	2.0	13	100	0	52	30	7	0	61	1.24
418799--418855	28	2.0	28	83	6	71	35	19	14	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430095--430140	21	2.1	22	84	4	58	21	28	19	30	1.98
443489--443549	30	2.0	31	87	9	90	45	18	13	22	1.83
445171--445870	118	6.1	117	70	11	435	38	14	16	31	1.88
445282--445979	229	3.1	224	85	3	934	39	13	15	32	1.85
446934--447256	161	2.0	162	99	0	639	38	19	13	29	1.89
447403--447443	21	2.0	21	85	0	55	29	26	19	24	1.98
448374--448442	27	2.6	27	93	2	113	37	11	11	39	1.78
450820--450858	18	2.2	18	90	0	60	58	10	2	28	1.44
450814--450870	24	2.4	24	87	0	78	56	14	1	28	1.48
450826--450877	24	2.2	24	89	0	77	55	15	3	25	1.57
452521--452625	46	2.3	46	93	1	176	44	7	16	31	1.75
452776--452871	38	2.5	38	87	0	129	28	19	26	26	1.99
452836--452869	17	2.1	16	89	10	52	20	17	32	29	1.96
454847--454871	2	12.5	2	100	0	50	52	0	0	48	1.00
454869--454897	3	9.7	3	100	0	58	65	0	0	34	0.93
458201--458239	20	1.9	20	84	5	51	15	33	30	20	1.94
458645--458749	46	2.3	46	95	1	185	43	7	17	31	1.77
458898--458993	38	2.5	38	87	0	129	27	18	27	27	1.98
460693--462226	763	2.0	763	97	0	2870	34	16	19	29	1.94
467800--468267	183	2.6	183	89	2	717	27	14	13	44	1.82
492320--492355	11	3.2	11	92	4	54	36	0	0	63	0.94
492489--492526	15	2.4	16	86	8	60	0	31	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492671--492704	17	1.9	18	94	5	61	47	2	0	50	1.16
492765--492826	31	2.0	31	81	9	74	50	1	0	48	1.10
496888--496916	14	2.0	15	93	6	51	48	13	13	24	1.79
497231--497272	19	2.2	19	87	8	59	66	0	2	30	1.04
504712--504738	13	2.1	13	100	0	54	44	22	7	25	1.79
509328--509460	60	2.2	60	83	2	160	34	15	14	36	1.87
510090--510137	23	2.1	23	84	0	60	37	12	16	33	1.86
510514--510586	23	3.2	23	84	0	83	39	21	5	32	1.77
510988--511070	39	2.1	39	93	0	139	16	14	21	46	1.83
511333--511369	18	2.1	18	89	0	56	51	10	5	32	1.60
511618--511668	25	2.0	25	92	0	84	39	19	7	33	1.81
511937--511988	23	2.3	22	90	6	77	44	19	1	34	1.62
511947--512009	23	2.7	23	90	0	90	38	19	6	36	1.77
512341--512412	23	3.2	23	84	2	83	40	20	5	33	1.76
512771--512822	23	2.3	22	90	6	77	44	19	1	34	1.62
512781--512843	23	2.7	23	90	0	90	38	19	6	36	1.77
512082--512941	430	2.0	430	99	0	1686	39	13	8	39	1.74
515383--515908	184	2.9	184	95	0	930	33	16	14	35	1.89
517354--517439	6	14.3	6	75	0	55	18	34	9	37	1.83
517351--517418	9	7.6	9	78	6	75	20	35	8	35	1.84
517354--517439	18	4.4	18	73	18	66	18	34	9	37	1.83
518895--520515	199	8.1	199	98	0	3075	32	15	15	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
518895--520515	598	2.7	596	98	0	3109	32	15	15	37	1.88
520593--520641	19	2.6	19	93	0	80	57	10	2	30	1.43
524805--524851	20	2.4	19	79	10	58	19	17	8	55	1.67
524972--525017	20	2.3	20	89	10	76	17	17	10	54	1.70
528566--528604	20	2.0	20	100	0	78	25	2	0	71	0.98
528569--528617	20	2.5	20	89	0	71	28	2	2	67	1.13
529330--529473	73	2.0	71	97	2	270	30	13	6	48	1.69
531994--532089	48	2.0	49	87	2	140	46	7	10	35	1.66
548816--549050	119	2.0	119	89	1	364	35	5	14	44	1.70
550019--550147	61	2.1	60	82	4	152	45	3	17	33	1.64
550279--550312	16	2.1	17	88	5	52	55	0	2	41	1.15
550649--550684	3	11.7	3	88	5	54	33	5	0	61	1.19
553464--553553	22	4.1	22	85	0	108	23	18	22	35	1.96
553464--553553	44	2.0	44	85	4	119	23	18	22	35	1.96
554807--554890	22	4.0	21	84	7	116	28	36	21	13	1.91
554767--554891	42	3.0	42	83	6	150	30	34	20	14	1.93
556325--556545	64	3.5	63	79	7	191	32	19	19	27	1.97
557712--557829	32	3.8	32	81	9	154	33	17	17	30	1.94
557692--557881	63	3.0	63	91	2	294	34	17	17	30	1.93
557693--557863	31	5.5	31	75	12	161	34	17	16	31	1.92

Tables:   1   2

The End!