genome.fa.s8227.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008227.1 Hibiscus syriacus cultivar Beakdansim tig00110863_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  654371

Tables:   1   2   3   

This is table  3  of  3  ( 301 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
490460--490639	65	2.8	63	81	9	168	29	23	19	27	1.98
493043--493122	23	3.6	22	72	5	81	23	22	26	27	2.00
493047--493141	44	2.2	42	81	7	111	24	20	26	29	1.99
499631--499679	19	2.7	17	84	9	53	26	20	28	24	1.99
501924--501956	8	4.1	8	85	14	50	21	0	0	78	0.75
510141--510183	2	21.5	2	100	0	86	0	48	0	51	1.00
516870--516915	17	2.6	18	82	3	67	43	0	4	52	1.21
523526--523556	3	10.3	3	100	0	62	0	32	0	67	0.91
524047--524104	22	2.7	21	79	12	64	67	5	0	27	1.12
529348--529446	33	3.1	33	86	2	130	38	24	14	23	1.91
532189--532228	21	1.9	21	94	0	71	25	25	22	27	2.00
532784--532847	21	3.0	21	84	4	83	28	21	25	25	1.99
541311--541352	2	21.0	2	100	0	84	50	0	0	50	1.00
545934--545992	29	2.0	29	100	0	118	49	6	30	13	1.68
555992--556059	26	2.6	26	85	2	100	51	17	7	23	1.70
558355--558446	30	3.1	30	80	3	96	40	3	17	39	1.66
575476--575512	2	19.0	2	88	5	58	48	0	2	48	1.15
575661--575691	15	2.1	15	93	0	53	54	0	0	45	0.99
576699--576768	32	2.2	33	84	7	90	40	5	22	31	1.78
578437--578467	16	1.9	16	93	0	53	38	3	29	29	1.73
585635--585714	42	1.9	42	94	5	144	26	12	22	38	1.90
589080--589165	35	2.5	35	84	0	100	40	20	1	37	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589134--589176	21	2.0	21	100	0	86	46	13	0	39	1.44
589230--589265	16	2.2	17	90	5	56	41	0	8	50	1.33
589291--589324	16	2.0	18	88	11	54	26	2	5	64	1.30
589791--590038	130	1.9	130	93	0	424	36	13	14	35	1.85
592991--593148	80	2.0	80	88	3	239	34	14	11	39	1.82
598615--598828	111	1.9	111	95	0	383	36	7	11	45	1.67
600324--600375	18	2.9	17	94	5	86	28	23	21	26	1.99
600698--600733	18	2.0	18	88	0	54	30	19	36	13	1.91
600692--600731	21	1.9	21	84	0	53	30	17	37	15	1.90
607378--607414	15	2.4	16	82	17	51	32	5	10	51	1.60
607668--607715	23	2.1	23	88	0	69	35	6	18	39	1.76
608141--608591	182	2.5	182	93	2	743	26	15	13	43	1.85
608467--608712	107	2.2	109	93	4	424	25	16	14	43	1.86
609463--609551	46	2.0	46	93	2	153	28	16	25	29	1.97
609573--609610	20	1.9	20	94	0	67	18	15	34	31	1.92
610739--610783	21	2.1	21	87	0	63	33	15	40	11	1.83
618245--618315	26	3.0	25	66	17	62	25	16	26	30	1.97
618245--618333	46	2.0	46	93	2	153	28	16	25	29	1.97
618355--618392	20	1.9	20	94	0	67	18	15	31	34	1.92
618640--618850	112	1.9	112	94	2	370	25	11	14	48	1.77
625677--625739	33	1.9	33	90	0	99	22	34	22	20	1.96
628389--628528	66	2.1	66	93	0	235	28	12	20	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
638232--638278	24	2.0	24	86	0	67	51	14	12	21	1.76
638555--638639	41	2.1	41	97	0	161	32	30	21	15	1.94
639996--640027	14	2.1	16	88	11	50	43	6	6	43	1.54
643307--643525	109	2.0	109	81	7	257	43	8	8	39	1.66
644399--644440	15	2.9	14	89	7	57	0	21	2	76	0.90
644399--644440	20	2.1	20	86	8	59	0	21	2	76	0.90
644909--644992	3	28.7	3	78	9	93	61	0	0	38	0.96
644901--644996	12	7.8	12	73	21	67	61	0	0	38	0.96
645234--646010	113	7.0	113	91	2	1110	30	18	14	36	1.91
645950--646058	42	2.7	40	85	5	164	22	22	5	49	1.70
645743--646282	256	2.1	264	87	5	789	28	19	12	39	1.88
645991--646317	113	2.9	113	92	0	537	31	18	11	37	1.87
645624--646291	369	1.8	367	92	0	1129	29	19	13	38	1.89
647031--647287	105	2.4	105	98	0	496	34	22	13	28	1.93
647200--647370	83	2.1	83	97	0	324	36	22	13	27	1.91
647095--647483	188	2.1	188	98	0	751	35	22	13	29	1.92
647283--647475	105	1.8	105	97	0	368	34	21	12	30	1.91

Tables:   1   2   3

The End!