genome.fa.s8238.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008238.1 Hibiscus syriacus cultivar Beakdansim tig00110885_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  622934

Tables:   1   2   3   

This is table  3  of  3  ( 331 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
513981--514100	64	1.9	64	92	0	204	44	12	13	30	1.80
516750--516802	26	2.0	26	100	0	106	30	15	18	35	1.92
517607--518354	176	3.9	183	77	14	574	30	13	16	39	1.87
517729--518375	197	3.2	197	85	7	878	31	14	15	38	1.87
523477--523526	15	3.3	15	94	0	82	32	2	48	18	1.59
524072--524693	198	3.1	198	95	0	1120	30	16	15	37	1.90
525022--525071	19	2.6	19	93	0	82	58	10	2	30	1.42
526212--526247	17	2.1	17	94	0	63	33	5	8	52	1.55
526545--526579	18	1.9	18	100	0	70	5	37	0	57	1.23
527040--527067	14	2.0	14	100	0	56	35	7	0	57	1.26
527041--527085	23	1.9	24	86	13	67	35	4	0	60	1.17
530340--530392	21	2.5	21	93	0	88	30	32	20	16	1.95
530396--530498	52	2.0	54	92	5	176	24	21	18	35	1.95
531330--531468	19	6.9	19	73	12	116	37	19	20	23	1.94
531341--531455	61	1.9	61	98	0	221	38	19	20	22	1.94
531402--531487	40	2.1	42	91	4	140	37	23	19	19	1.94
531330--531467	61	2.3	62	87	5	219	37	19	19	23	1.94
531331--531493	19	8.0	21	73	11	99	36	20	20	22	1.95
531459--531527	33	2.1	33	94	0	120	31	28	20	18	1.96
532924--532948	3	8.3	3	100	0	50	68	0	0	32	0.90
534980--535314	166	2.0	166	98	0	654	40	18	8	32	1.80
537171--537212	21	2.0	21	86	13	59	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538682--538724	20	2.2	20	100	0	86	34	27	13	23	1.93
538689--538733	20	2.2	20	92	0	72	37	26	15	20	1.92
538723--538821	21	4.8	20	74	6	72	37	23	19	20	1.94
538788--538981	20	9.6	20	81	5	221	35	25	19	19	1.95
538788--538981	60	3.2	60	83	0	253	35	25	19	19	1.95
539359--539429	33	2.2	33	92	0	115	11	22	18	47	1.80
539549--539603	14	3.6	14	73	21	56	40	23	27	9	1.85
539549--539619	33	2.2	33	92	0	115	42	25	23	8	1.82
539615--539712	19	5.7	19	70	22	81	10	24	22	42	1.84
539637--539726	14	5.7	14	74	23	81	8	25	23	42	1.83
539620--539734	33	3.5	33	95	0	212	9	24	20	45	1.81
545690--545714	10	2.5	10	100	0	50	56	0	0	44	0.99
550121--550234	29	3.9	29	94	0	174	16	32	28	22	1.96
550302--550347	14	3.3	14	90	0	65	6	28	41	23	1.79
550542--550625	34	2.5	35	80	3	91	16	17	5	59	1.56
550859--551097	65	3.8	64	85	4	272	31	23	15	28	1.96
550859--551095	127	1.9	128	83	5	318	32	23	16	28	1.96
552586--552657	29	2.5	29	97	0	135	13	29	37	19	1.90
552723--552793	17	4.4	16	82	7	90	21	9	52	16	1.73
552733--552799	16	4.2	16	81	7	82	20	7	56	14	1.62
552723--552793	33	2.2	32	92	2	115	21	9	52	16	1.73
552731--552794	15	4.1	15	82	9	83	20	7	54	17	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
553259--553302	21	2.1	21	91	0	70	29	0	15	54	1.42
554137--554195	26	2.3	25	75	18	66	47	8	3	40	1.51
556974--557322	11	28.9	11	66	22	70	43	2	10	44	1.49
556980--557330	121	2.9	123	94	3	636	43	1	9	44	1.49
557038--557330	26	11.9	26	74	15	203	43	2	9	44	1.49
557475--557541	23	3.1	21	72	24	59	41	4	7	46	1.52
558671--558860	95	2.0	97	97	2	366	35	15	17	31	1.91
559704--559734	15	2.1	14	94	5	53	54	6	0	38	1.26
559709--559755	16	3.0	16	84	9	53	59	10	0	29	1.31
560131--560186	4	14.5	4	78	10	55	0	33	0	66	0.92
560127--560178	19	2.5	22	81	15	65	0	36	0	63	0.95
560131--560187	15	3.7	15	86	11	80	0	35	0	64	0.93
560190--560235	23	2.0	23	100	0	92	8	39	4	47	1.54
560248--560292	22	2.0	23	95	4	83	26	31	13	28	1.94
560482--560552	29	2.4	29	97	0	133	25	32	30	11	1.91
560502--560553	17	3.4	17	65	25	51	26	30	28	13	1.94
560499--560567	29	2.6	25	88	11	95	26	33	27	13	1.93
560624--560703	35	2.5	31	83	15	115	18	22	33	25	1.97
560637--560707	35	2.0	35	97	0	133	21	19	33	25	1.97
560702--560743	12	3.5	12	93	0	75	19	35	19	26	1.95
560772--560834	26	2.4	26	97	0	117	22	19	33	25	1.97
560765--560843	26	2.6	32	71	28	89	20	20	32	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
561877--561919	19	2.2	20	83	4	52	76	4	11	6	1.13
566829--566858	3	10.0	3	100	0	60	33	0	0	66	0.92
575918--576795	439	2.0	439	99	0	1747	39	11	13	35	1.81
577804--577841	16	2.4	17	82	13	53	21	23	0	55	1.44
588050--588100	22	2.3	22	96	0	93	15	43	25	15	1.86
593948--593989	21	2.0	21	95	0	75	35	4	16	42	1.69
594001--594040	20	2.0	21	90	5	64	35	5	15	45	1.68
593947--594074	54	2.4	53	93	3	213	33	4	13	48	1.63
598626--598667	21	2.0	21	95	0	75	35	4	16	42	1.69
598679--598718	20	2.0	21	90	5	64	35	5	15	45	1.68
598625--598751	53	2.4	53	96	2	229	33	5	13	48	1.65
598699--598786	31	2.8	31	96	3	158	31	6	10	51	1.62
603832--603884	23	2.3	23	96	0	97	32	11	30	26	1.91
608904--609204	48	6.3	47	77	8	257	28	8	40	21	1.83
608904--609165	144	1.8	144	83	3	348	28	9	39	22	1.85
608899--609209	96	3.2	96	83	1	347	28	8	40	22	1.83
608904--609204	144	2.1	144	80	2	327	28	8	40	21	1.83
609194--610396	48	25.2	48	73	5	862	25	3	47	23	1.67
609275--610297	191	5.4	190	94	1	1669	25	2	47	23	1.65
610234--610321	27	3.5	27	68	17	89	22	4	47	25	1.70
609194--610297	96	11.6	96	91	1	1695	25	2	47	23	1.66
610371--610509	71	1.9	72	86	1	199	23	2	51	23	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
610424--610458	18	1.9	18	88	0	52	8	0	65	25	1.21
612334--612515	92	2.0	92	98	1	355	51	15	11	21	1.75
615302--615399	44	2.1	47	85	7	130	27	11	21	39	1.87

Tables:   1   2   3

The End!