genome.fa.s8247.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008247.1 Hibiscus syriacus cultivar Beakdansim tig00110897_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  310145

Tables:   1   2   

This is table  2  of  2  ( 186 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157688--157805	24	4.9	24	85	9	123	40	20	14	24	1.90
157688--157802	48	2.4	48	88	2	160	40	20	14	24	1.90
157721--157783	12	5.2	12	70	21	51	41	22	12	23	1.88
157664--157819	48	3.2	48	80	7	138	44	19	12	23	1.85
160338--160413	13	5.5	13	75	14	71	17	19	44	18	1.87
160360--160399	18	2.2	18	90	0	62	12	17	50	20	1.78
160346--160419	31	2.4	31	86	0	103	16	18	45	18	1.85
160338--160413	31	2.7	26	72	18	71	17	19	44	18	1.87
162516--162627	24	4.7	24	85	4	145	39	18	16	25	1.92
162547--162647	48	2.1	48	81	7	116	42	19	15	21	1.89
165143--165173	13	2.4	13	94	0	53	16	22	45	16	1.85
165150--165197	18	2.7	18	90	0	78	14	20	47	16	1.82
171125--171203	33	2.4	33	97	0	149	21	13	24	40	1.90
171125--171219	33	3.0	32	90	4	122	21	13	24	41	1.89
192670--192698	3	9.7	3	100	0	58	68	0	0	31	0.89
192914--192947	12	2.8	12	90	4	50	58	26	2	11	1.47
193418--193475	20	2.9	20	68	0	53	34	29	12	24	1.91
195321--195437	24	4.9	24	83	11	132	41	20	15	23	1.90
195321--195434	47	2.4	48	88	4	160	41	20	15	22	1.90
197937--198012	13	5.5	13	73	14	71	18	21	43	17	1.88
197959--197994	18	2.0	18	88	0	54	16	22	44	16	1.86
197945--198018	31	2.4	31	93	0	121	17	20	44	17	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200087--200201	24	4.8	24	91	4	178	40	20	16	23	1.91
200063--200218	48	3.2	48	81	7	138	43	19	13	23	1.86
200067--200218	72	2.1	71	79	8	173	43	19	13	23	1.87
202683--202732	18	2.9	17	85	5	73	14	18	48	20	1.82
202694--202752	30	2.0	30	89	0	91	15	16	49	18	1.80
202712--202746	12	2.8	13	86	4	54	14	17	51	17	1.77
203896--203957	32	1.9	32	100	0	124	22	14	25	37	1.92
208009--208086	33	2.4	33	95	2	140	21	14	24	39	1.90
208009--208102	33	3.0	32	89	6	113	21	13	24	40	1.89
217702--217817	34	3.4	34	96	2	207	1	27	18	52	1.55
218296--218346	3	16.3	3	80	8	57	58	0	0	41	0.98
218281--218344	19	3.5	20	76	24	77	56	0	0	43	0.99
218281--218346	31	2.1	31	83	10	82	56	0	0	43	0.99
218299--218348	16	3.1	16	81	16	59	58	0	0	42	0.98
218309--218354	22	2.1	22	88	8	67	52	0	0	47	1.00
239024--239057	12	2.8	12	90	4	50	58	26	2	11	1.47
239529--239586	20	2.9	20	68	0	53	34	29	12	24	1.91
241455--241572	24	4.9	24	85	9	141	40	20	15	23	1.90
241455--241569	48	2.4	48	89	2	169	40	20	15	23	1.90
241431--241586	48	3.2	48	81	7	147	44	19	12	23	1.85
244060--244122	8	7.5	8	82	10	56	25	23	33	17	1.96
244109--244210	13	7.5	13	77	10	105	16	20	43	19	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
244117--244216	31	3.4	31	83	9	120	16	20	44	20	1.87
244109--244210	44	2.4	43	82	7	122	16	20	43	19	1.88
244157--244196	18	2.2	18	95	0	71	12	20	50	17	1.78
246313--246430	24	4.9	24	87	5	139	38	21	16	23	1.92
246313--246427	48	2.4	48	89	2	169	39	20	16	23	1.92
248934--248994	13	4.3	13	77	18	68	16	21	45	16	1.85
248940--248980	18	2.3	18	95	0	73	12	21	48	17	1.79
248934--249000	31	2.2	31	94	0	116	16	20	46	16	1.84
271899--271932	12	2.8	12	90	4	50	58	26	2	11	1.47
272404--272461	20	2.9	20	68	0	53	34	29	12	24	1.91
274321--274454	24	5.5	24	77	11	94	42	18	13	25	1.87
274338--274452	48	2.4	48	84	5	144	41	18	15	24	1.89
276952--277025	13	5.3	13	77	15	76	18	20	44	16	1.87
276975--277009	18	1.9	18	88	0	52	20	22	40	17	1.92
276960--277033	31	2.4	31	81	0	94	17	21	44	16	1.86
279132--279245	24	4.8	24	88	5	160	40	19	15	24	1.90
279112--279262	48	3.2	47	78	9	144	43	19	13	23	1.86
281750--281788	16	2.3	17	86	8	53	23	28	30	17	1.97
281775--281817	18	2.4	18	96	0	77	13	23	46	16	1.83
287706--287784	33	2.4	33	97	0	149	21	13	24	40	1.90
287706--287800	33	3.0	32	90	4	122	21	13	24	41	1.89
301141--301198	19	3.2	18	73	23	59	65	6	12	15	1.45

Tables:   1   2

The End!