genome.fa.s8248.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008248.1 Hibiscus syriacus cultivar Beakdansim tig00110899_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124513

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2447--2479	2	16.5	2	100	0	66	51	0	0	48	1.00
3915--3944	15	2.0	15	100	0	60	33	26	20	20	1.97
4496--4539	23	1.9	23	81	9	54	36	4	22	36	1.75
4614--4705	31	3.0	30	84	3	130	23	17	22	35	1.95
8952--9040	31	2.9	29	76	12	90	24	15	23	35	1.94
13824--13905	33	2.5	33	87	0	128	37	18	15	28	1.91
15896--15940	13	3.4	13	80	17	56	44	8	0	46	1.34
16838--16905	29	2.3	29	89	0	100	33	2	27	35	1.72
17254--17370	2	56.5	2	73	13	85	41	4	2	52	1.35
17302--17368	29	2.4	27	87	7	91	38	5	2	52	1.41
17380--22726	4	1367.2	4	92	5	8775	48	25	0	25	1.57
22714--22830	2	59.5	2	79	6	132	48	3	3	44	1.36
24407--24439	17	1.9	17	93	0	57	21	6	0	72	1.05
25990--26027	16	2.4	16	87	12	53	36	0	0	63	0.95
26044--26102	2	29.5	2	100	0	118	49	0	0	50	1.00
26108--26327	113	1.9	114	92	3	370	37	9	15	38	1.79
32924--32991	35	1.9	36	87	3	102	14	47	16	22	1.82
38809--38866	12	4.8	12	80	0	62	50	18	17	13	1.79
41346--41378	17	1.9	17	88	11	50	30	21	27	21	1.98
43572--43655	12	7.0	12	71	5	62	53	19	13	14	1.72
43572--43655	24	3.5	24	86	0	105	53	19	13	14	1.72
48483--48522	21	1.9	21	89	0	62	60	20	2	17	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50028--50062	18	1.9	18	88	0	52	68	8	2	20	1.29
56620--56681	25	2.4	25	94	2	106	46	8	4	40	1.55
56620--56681	12	4.8	13	70	21	51	46	8	4	40	1.55
57959--58118	79	2.0	79	90	0	248	25	11	14	49	1.76
62264--62311	12	3.5	15	72	21	59	58	2	4	35	1.29
62266--62323	26	2.2	27	96	3	109	60	3	3	32	1.30
62282--62324	13	3.2	13	74	6	50	65	4	2	27	1.25
62307--62352	20	2.2	21	81	11	60	67	4	2	26	1.21
70730--70806	17	4.4	17	75	22	79	15	22	42	19	1.88
70776--70804	14	2.1	14	100	0	58	10	20	48	20	1.79
70802--70851	9	5.1	10	74	13	50	28	30	22	20	1.98
70800--70851	20	2.7	19	87	3	68	26	28	25	19	1.98
78112--78171	17	3.4	17	84	8	84	15	23	43	18	1.87
78165--78253	9	9.3	9	70	11	61	31	29	22	16	1.96
78165--78254	19	4.7	19	87	1	99	31	28	22	17	1.97
80480--80592	57	2.0	58	91	1	183	16	24	16	41	1.89
82886--83055	87	1.9	89	93	2	299	38	11	5	44	1.64
98672--98710	2	19.0	2	89	5	60	48	0	5	46	1.24
102570--102608	20	2.0	20	94	0	69	41	15	17	25	1.89
102829--102894	26	2.5	26	83	11	82	51	3	3	42	1.32
107715--108195	48	10.3	48	80	7	526	32	17	21	27	1.96
107741--108195	96	4.9	95	89	5	641	31	18	21	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109342--109412	18	3.8	18	72	26	58	5	14	1	78	0.99
109363--109406	23	1.9	23	86	9	63	6	13	2	77	1.07
120885--120913	13	2.1	14	93	6	51	55	6	3	34	1.44

Tables:   1

The End!