genome.fa.s8249.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008249.1 Hibiscus syriacus cultivar Beakdansim tig00110901_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  175145

Tables:   1   2   

This is table  1  of  2  ( 129 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11406--11437	17	1.9	17	93	6	57	46	15	6	31	1.71
18271--18323	21	2.5	21	100	0	106	41	18	15	24	1.89
23084--23116	12	2.5	14	85	14	52	42	0	0	57	0.98
25890--26005	21	5.6	21	67	10	51	32	26	18	22	1.97
25993--26185	20	9.6	20	84	5	246	34	27	19	18	1.95
26565--26635	33	2.2	33	94	0	124	11	23	16	47	1.79
26715--26788	21	3.5	20	82	8	94	45	17	20	16	1.85
26776--26832	14	3.7	14	75	20	60	43	22	24	8	1.81
26769--26848	33	2.4	33	95	0	142	47	22	21	8	1.78
26844--26971	19	7.1	19	71	19	87	10	25	18	45	1.82
26866--26922	14	3.7	14	75	20	60	8	24	22	43	1.81
26849--26971	33	3.5	33	88	10	165	10	24	18	46	1.81
26907--26971	21	3.1	21	82	4	96	10	26	15	47	1.78
28653--28968	93	3.4	93	98	0	605	22	13	18	45	1.84
29098--29156	19	3.4	19	75	22	74	49	30	13	6	1.68
29066--29156	33	2.7	33	89	1	128	47	28	15	8	1.75
29082--29145	14	4.3	14	75	19	58	50	26	17	6	1.69
29152--29310	19	8.6	19	82	7	175	10	19	23	45	1.81
29157--29294	52	2.5	54	88	5	190	9	19	23	47	1.78
31237--31272	14	2.6	14	95	0	63	33	0	22	44	1.53
31363--31450	19	4.8	19	82	14	123	47	15	22	13	1.81
31363--31469	53	2.0	53	98	1	207	45	16	24	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31459--31734	72	3.9	68	75	17	253	13	22	17	46	1.83
31465--31734	105	2.6	109	88	7	407	13	21	17	47	1.82
31465--31734	53	5.1	52	88	8	397	13	21	17	47	1.82
34218--34264	24	2.0	24	87	8	69	38	21	14	25	1.92
34957--35185	20	11.4	20	85	1	235	19	17	25	37	1.94
35153--35250	21	4.8	20	75	10	81	21	19	21	37	1.94
35153--35251	42	2.4	43	77	11	100	21	19	22	37	1.94
36578--36608	16	1.9	16	100	0	62	58	19	3	19	1.53
41497--41612	60	1.9	60	82	0	142	35	12	15	37	1.85
46551--46846	58	5.1	57	73	14	180	41	13	7	37	1.73
46585--46846	58	4.5	55	73	15	183	42	13	6	37	1.71
50054--50098	17	2.9	15	78	12	54	44	15	11	28	1.81
50603--50645	22	1.9	23	90	4	70	34	0	2	62	1.08
50603--50645	23	1.9	22	86	13	61	34	0	2	62	1.08
51334--51383	24	2.1	23	85	3	64	26	2	2	70	1.09
51504--51533	14	2.1	15	93	6	53	70	0	0	30	0.88
53071--53106	14	2.6	14	100	0	72	5	38	0	55	1.23
62358--62395	20	1.9	20	94	0	67	26	18	28	26	1.98
63652--63705	27	2.0	27	100	0	108	40	18	11	29	1.85
63913--64017	36	2.9	36	81	0	120	40	14	13	31	1.84
67775--67976	2	102.0	2	67	19	86	48	3	3	44	1.36
67774--67975	13	16.1	13	67	24	89	49	3	3	44	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67781--67849	31	2.2	33	85	12	92	49	2	1	46	1.25
68046--68093	19	2.6	19	84	15	57	39	0	27	33	1.57
68293--68481	2	97.0	2	67	16	94	46	2	6	45	1.40
68531--68591	7	8.7	7	79	0	59	47	34	0	18	1.49
68531--68591	28	2.2	28	81	0	77	47	34	0	18	1.49
68884--68910	13	2.1	13	100	0	54	44	0	0	55	0.99
69074--69139	29	2.2	29	83	5	78	45	3	15	36	1.61
69561--69599	17	2.3	17	95	0	69	51	7	0	41	1.31
69682--69750	13	5.2	13	85	5	66	50	26	0	23	1.49
69698--69759	14	4.5	14	87	2	72	51	27	0	20	1.48
69686--69759	21	3.6	21	75	12	64	50	28	0	21	1.49
69932--69978	14	3.7	14	71	26	50	51	4	0	44	1.21
69930--69979	23	2.1	24	96	3	93	48	4	0	48	1.20
70018--70044	13	2.1	13	100	0	54	44	0	0	55	0.99
70212--70287	16	4.7	16	86	1	98	40	11	23	23	1.88
70195--70287	32	2.9	32	88	3	125	40	11	23	23	1.88
73610--73695	37	2.6	31	73	21	84	47	4	0	47	1.22
74613--75136	262	2.0	262	95	0	940	31	14	13	40	1.85
79097--79155	12	4.9	12	85	0	73	11	22	16	49	1.78
79097--79155	24	2.5	24	97	0	109	11	22	16	49	1.78
79299--79372	32	2.3	32	86	2	96	13	22	29	33	1.93
82547--82598	24	2.2	24	89	0	77	21	15	9	53	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82740--82813	32	2.3	32	86	8	107	12	17	32	37	1.87
83570--83596	2	13.5	2	100	0	54	51	0	0	48	1.00
84679--84708	13	2.3	13	94	0	51	23	3	0	73	0.98
84997--85387	186	2.1	185	95	0	694	42	3	8	45	1.50
86723--86757	3	11.7	3	100	0	70	31	0	0	68	0.90
88717--88751	17	2.1	17	89	5	54	54	8	11	25	1.64
90703--90746	22	2.0	22	86	0	61	56	0	0	43	0.99
90702--90746	21	2.1	21	87	4	63	55	0	0	44	0.99
92725--92910	86	2.2	86	86	1	275	32	15	18	34	1.92
96723--96915	96	2.0	96	98	0	377	33	19	21	25	1.97
99835--99874	21	1.9	21	85	10	55	22	22	32	22	1.98
105312--105661	183	1.9	183	95	0	637	27	21	21	30	1.98
106948--107034	37	2.4	37	88	1	122	25	20	13	40	1.89
106859--107163	102	3.0	102	93	1	495	30	18	13	37	1.89
107050--107135	36	2.4	36	86	3	111	25	18	13	41	1.88
107118--107176	30	2.0	30	83	12	77	42	15	10	32	1.80
107190--107304	36	3.1	36	85	4	167	29	20	11	39	1.87
107345--107459	33	3.5	33	89	5	162	37	19	11	32	1.87
107414--107599	67	2.7	67	86	1	255	29	21	12	37	1.90
107918--108150	106	2.2	107	87	0	333	35	25	17	21	1.95
121455--121497	10	4.7	9	83	13	52	62	0	0	37	0.95
122321--122376	23	2.4	23	84	0	67	16	17	14	51	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122335--122396	23	2.7	23	84	0	79	14	17	11	56	1.67
127040--127089	15	3.3	15	78	10	57	44	24	8	24	1.80
127498--127533	18	1.9	20	88	11	58	2	38	0	58	1.13
128813--128961	29	5.2	29	76	8	126	30	6	22	40	1.79
128830--128981	29	5.3	29	75	6	114	30	6	22	40	1.79
129755--129975	118	1.9	118	95	0	397	18	15	33	32	1.93
136032--136056	13	1.9	13	100	0	50	16	48	24	12	1.79
136033--136097	18	3.6	18	87	0	103	16	47	24	10	1.79
136116--136279	29	5.7	29	76	7	136	28	6	23	40	1.80
136146--136299	58	2.7	58	81	6	170	31	5	22	40	1.77
136145--136299	29	5.3	29	74	7	118	30	5	22	40	1.77
137058--137277	118	1.9	118	95	1	397	17	15	34	32	1.92
140987--141103	57	2.1	56	83	4	146	33	9	11	46	1.72
145009--145037	2	14.5	2	100	0	58	51	0	0	48	1.00
147039--147184	60	2.5	60	86	5	190	35	17	13	34	1.88
149177--149201	1	25.0	1	100	0	50	100	0	0	0	0.00
161910--161953	15	2.8	16	86	13	65	81	0	4	13	0.83
161910--161953	23	1.9	23	90	9	72	81	0	4	13	0.83
161910--161961	7	6.5	8	88	8	63	80	0	7	11	0.89
161909--161959	23	2.2	23	82	6	68	78	0	9	11	0.97
162962--163487	164	3.2	165	91	1	824	30	15	26	28	1.95
162961--163496	55	9.8	55	90	1	799	30	14	26	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164494--164519	1	26.0	1	100	0	52	100	0	0	0	0.00
168513--168549	19	1.9	20	88	5	58	67	2	8	21	1.29
168601--168747	16	8.6	17	78	14	65	48	2	2	45	1.30
168664--168820	2	79.0	2	77	8	160	47	1	3	46	1.31
168999--169036	2	18.5	2	89	5	58	52	2	0	44	1.14
169284--169328	10	4.4	11	81	13	51	51	4	2	42	1.34
169295--169355	2	31.0	2	81	15	74	50	1	1	45	1.21
169295--169386	23	4.0	23	72	23	79	46	4	2	46	1.34
169426--169478	21	2.5	21	87	0	79	39	7	5	47	1.56
169406--169507	21	4.8	21	76	12	75	37	5	8	48	1.59

Tables:   1   2