genome.fa.s8256.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008256.1 Hibiscus syriacus cultivar Beakdansim tig00110909_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  250029

Tables:   1   2   

This is table  2  of  2  ( 155 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194903--194967	23	2.9	23	86	2	96	30	26	21	21	1.98
195553--195700	55	2.7	54	82	9	183	31	23	16	28	1.96
201649--201700	2	26.0	2	96	0	95	50	1	0	48	1.12
202011--202106	47	2.0	47	93	0	165	37	21	8	32	1.84
203174--203228	22	2.5	22	93	0	92	16	23	38	21	1.93
203553--203776	53	4.2	53	88	1	306	23	28	19	28	1.98
204205--204327	42	3.0	42	85	3	142	31	20	20	27	1.97
204252--204319	22	3.2	21	68	16	59	30	20	22	26	1.98
204250--204726	42	11.0	42	66	14	191	30	21	18	29	1.97
204322--204775	135	3.4	135	95	0	766	29	21	17	31	1.96
206473--206541	33	2.1	33	83	5	86	30	36	1	31	1.67
212118--212186	33	2.1	33	83	5	86	30	36	1	31	1.67
212666--212703	13	3.2	12	85	7	51	10	18	2	68	1.30
215894--216256	59	6.2	59	82	2	401	37	11	22	29	1.88
215887--216256	118	3.1	117	83	5	451	37	11	21	29	1.89
215893--216256	177	2.1	176	82	6	450	37	10	22	29	1.88
216207--216376	60	2.8	60	87	1	243	34	12	21	31	1.90
216579--217065	44	11.0	44	90	1	706	39	6	19	34	1.78
216669--216741	23	3.3	23	61	7	60	47	2	16	32	1.61
222615--223077	59	7.9	59	73	10	244	36	10	22	30	1.88
222616--222917	117	2.6	116	79	8	301	35	10	23	30	1.88
225689--225863	60	2.9	60	87	2	235	36	12	21	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225721--225909	60	3.2	60	85	6	208	37	12	21	29	1.89
225692--225909	60	3.7	60	82	6	205	38	11	19	30	1.88
226016--226243	43	5.3	43	92	3	377	40	7	18	33	1.79
226015--226243	87	2.6	86	95	1	395	40	7	18	33	1.79
226211--226273	30	2.1	31	93	3	110	42	7	20	28	1.80
226165--226303	74	1.9	75	90	1	226	40	9	19	30	1.83
226242--226371	45	2.9	44	86	2	163	34	6	22	36	1.81
238381--238476	47	2.0	47	89	0	147	41	21	6	30	1.78
239531--239599	22	3.1	22	83	4	86	13	18	40	27	1.88
241141--241266	55	2.3	55	80	4	139	36	23	13	26	1.92
241174--241318	55	2.7	53	87	5	193	31	21	17	29	1.96
246014--246068	25	2.2	25	86	0	83	20	20	20	40	1.92
247794--247861	27	2.6	27	90	4	113	41	17	11	29	1.85

Tables:   1   2

The End!