genome.fa.s8272.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008272.1 Hibiscus syriacus cultivar Beakdansim tig00110929_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  465257

Tables:   1   2   

This is table  2  of  2  ( 208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287713--287739	3	9.0	3	100	0	54	0	33	0	66	0.92
293762--293842	41	2.0	41	85	4	110	46	6	2	44	1.41
304874--304934	21	2.9	21	92	2	95	29	22	27	19	1.98
306092--306122	16	1.9	16	93	0	53	35	3	16	45	1.63
306444--306504	23	2.7	23	84	0	77	19	24	26	29	1.99
312722--312784	33	1.9	33	96	0	117	30	17	12	39	1.87
318038--318067	2	15.0	2	100	0	60	50	0	0	50	1.00
323286--323801	193	2.8	185	82	7	611	40	15	13	30	1.86
323828--323860	3	11.0	3	100	0	66	33	0	0	66	0.92
325656--325706	2	26.0	2	96	4	95	50	0	0	49	1.00
326333--326392	18	3.6	16	82	14	68	26	1	0	71	0.95
326339--326392	22	2.4	22	84	9	65	27	1	0	70	0.98
326346--326387	15	2.7	15	88	3	57	26	0	0	73	0.83
327851--327912	26	2.3	27	86	5	81	20	11	9	58	1.61
329813--329993	89	2.0	90	98	1	355	33	17	18	30	1.95
333405--333617	110	1.9	111	90	2	340	32	15	20	30	1.94
335623--335748	48	2.6	47	83	7	155	36	15	19	28	1.92
336112--336164	22	2.4	22	87	0	79	33	15	13	37	1.86
336572--337447	113	7.9	113	90	5	1251	38	15	19	27	1.91
337730--337773	3	15.0	3	90	4	72	36	0	0	63	0.95
338583--338660	39	2.0	39	100	0	156	30	17	28	23	1.97
339580--339622	2	22.0	2	90	4	70	48	2	0	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343220--343266	19	2.7	18	83	9	62	48	4	4	42	1.42
356143--356199	16	3.4	16	79	15	53	29	1	0	68	1.00
356123--356197	29	2.6	29	77	8	82	32	1	1	65	1.09
356390--356415	2	13.0	2	100	0	52	50	0	0	50	1.00
356475--356512	15	2.6	14	88	12	51	47	0	0	52	1.00
356484--356531	19	2.5	21	83	12	59	50	0	0	50	1.00
356772--356821	17	3.0	16	78	18	57	44	2	12	42	1.53
367101--367138	17	2.3	17	90	4	60	44	0	0	55	0.99
377591--377668	34	2.3	34	84	10	97	46	0	0	53	1.00
377591--377692	39	2.7	39	79	11	97	45	0	0	54	0.99
386090--386147	31	1.9	30	86	10	82	27	10	5	56	1.54
387382--387417	18	2.0	18	94	0	63	33	5	13	47	1.67
389068--389126	31	1.9	31	92	0	100	40	6	10	42	1.65
389138--389188	22	2.4	22	83	9	61	56	7	0	35	1.28
389153--389201	22	2.2	22	85	3	62	53	14	0	32	1.41
389141--389386	54	4.5	53	74	18	245	53	12	0	34	1.38
389274--389327	14	3.6	14	72	18	54	57	5	0	37	1.22
389250--389531	32	9.8	32	75	21	282	53	10	0	35	1.39
389316--389358	22	2.0	22	100	0	86	51	13	0	34	1.42
389318--389366	22	2.2	22	85	3	62	57	14	0	28	1.38
389360--389413	14	3.6	14	72	18	54	57	5	0	37	1.22
389402--389444	22	2.0	22	95	0	77	51	11	2	34	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389370--389750	54	7.0	53	82	12	470	53	11	0	34	1.41
389404--389452	22	2.2	22	85	3	62	55	12	2	30	1.48
389456--389498	22	2.0	22	95	0	77	51	11	0	37	1.39
389458--389506	22	2.2	22	85	3	62	55	12	0	32	1.37
389236--389821	220	2.6	220	93	2	987	53	11	0	33	1.40
389558--389821	32	9.4	32	71	26	224	53	12	0	33	1.42
389676--389718	22	2.0	22	95	0	77	48	13	2	34	1.56
389760--389807	22	2.4	19	78	18	53	52	14	0	33	1.42
389667--389935	94	2.7	96	79	14	266	51	10	0	37	1.39
389801--389965	15	10.5	15	75	14	154	52	4	0	43	1.25
389721--389935	47	4.5	47	86	10	260	52	9	0	38	1.34
396402--396438	15	2.5	15	95	0	65	5	16	70	8	1.30
401912--401951	21	1.9	21	94	0	71	35	22	15	27	1.94
402562--402622	3	20.7	3	96	3	115	65	0	0	34	0.93
406658--406773	32	3.7	32	77	1	117	39	15	28	16	1.89
415080--415118	20	2.0	20	85	5	53	38	10	5	46	1.60
415321--415361	21	2.0	21	90	0	64	41	14	0	43	1.45
425199--425258	31	1.9	31	82	0	75	43	15	11	30	1.82
425434--425472	20	2.0	20	85	5	53	48	15	0	35	1.45
426079--426135	28	2.0	28	86	6	80	26	14	24	35	1.93
430229--430299	18	3.9	18	75	14	74	28	30	5	35	1.80
430309--430369	20	3.3	20	69	21	69	26	29	3	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430240--430395	35	4.5	36	90	6	241	28	28	5	37	1.79
432237--432304	28	2.4	28	97	0	127	38	19	2	39	1.67
432521--432567	21	2.3	20	82	10	51	36	2	12	48	1.53
432828--432926	34	2.9	34	77	14	96	41	4	7	47	1.49
432776--432921	68	2.2	64	81	11	163	42	3	6	47	1.47
433080--433143	13	4.9	13	96	0	119	29	17	23	29	1.97
436233--436275	20	2.2	20	100	0	86	37	16	16	30	1.91
450880--451324	228	2.0	224	93	2	766	45	8	7	39	1.61
451390--451436	20	2.4	19	89	10	76	55	10	17	17	1.69
453896--453960	32	2.0	32	85	8	87	29	1	44	24	1.63
455865--457277	395	3.6	397	96	1	2626	37	14	15	32	1.87
455865--457277	197	7.1	198	96	1	2615	37	14	15	32	1.87
458743--458835	3	31.0	3	78	0	96	35	5	34	24	1.79
458731--458819	42	2.1	42	91	0	142	34	7	34	22	1.83
458728--458835	12	9.0	12	84	0	99	36	6	34	23	1.80
458731--458835	18	5.8	18	80	0	111	35	6	34	23	1.81
460286--460945	184	3.7	184	94	4	1173	35	14	15	34	1.89
463485--463537	22	2.4	21	84	9	70	37	7	16	37	1.78
463500--463550	22	2.3	23	93	3	86	37	1	17	43	1.61
463386--464362	412	2.4	414	94	5	1703	40	8	12	38	1.75
464311--464374	23	2.8	23	85	2	76	35	7	17	39	1.78
464946--464982	19	1.9	19	88	0	56	27	16	10	45	1.80

Tables:   1   2

The End!