genome.fa.s8278.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008278.1 Hibiscus syriacus cultivar Beakdansim tig00110937_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  776496

Tables:   1   2   3   

This is table  3  of  3  ( 344 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508933--509057	36	3.5	36	77	7	112	37	12	20	30	1.88
509008--509241	105	2.2	102	83	7	283	38	12	18	30	1.88
509691--509736	4	12.2	4	82	13	62	26	0	21	52	1.47
509693--509728	18	2.1	17	94	5	63	25	0	22	52	1.47
510906--510951	17	2.8	17	78	15	51	4	13	13	69	1.33
510905--510958	23	2.3	24	75	12	58	3	12	12	70	1.30
510918--510949	12	2.8	11	90	9	55	6	9	12	71	1.29
513000--513061	32	2.0	32	96	3	117	61	9	14	14	1.57
514560--514603	22	2.0	22	81	0	52	52	13	4	29	1.60
516954--517005	3	17.3	3	76	7	52	61	3	3	30	1.32
517569--517635	21	3.2	21	68	19	68	14	20	26	37	1.92
517562--517646	41	2.1	41	95	4	154	16	21	23	38	1.92
517708--517750	21	2.0	21	100	0	86	39	32	13	13	1.85
521398--521455	30	1.9	30	89	6	91	39	18	6	34	1.78
528402--528455	2	27.0	2	100	0	108	50	0	0	50	1.00
532003--532055	22	2.5	20	80	16	63	32	30	7	30	1.85
532016--532060	22	2.0	23	86	4	65	33	33	4	28	1.77
536833--536969	60	2.3	60	79	2	132	37	18	17	26	1.93
539635--539677	20	2.2	20	88	8	63	16	0	6	76	0.99
540346--540406	30	2.0	31	87	3	88	52	6	16	24	1.67
542805--542839	18	1.9	18	88	0	52	54	0	17	28	1.43
545686--545821	65	2.1	65	97	0	254	38	11	25	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
547813--547872	22	2.8	22	79	2	68	15	10	13	61	1.56
547895--547930	3	12.0	3	100	0	72	33	0	0	66	0.92
555077--555144	31	2.2	31	81	5	75	39	16	19	25	1.91
560637--561188	276	2.0	274	98	0	1077	42	12	17	28	1.85
563933--563984	6	8.3	6	85	6	68	63	3	0	32	1.12
567508--567546	20	2.0	20	100	0	78	17	10	20	51	1.74
586638--586979	171	2.0	172	99	0	677	27	18	30	23	1.97
587563--588230	182	3.9	160	83	8	581	44	12	15	27	1.82
587713--588335	183	3.4	183	90	0	910	45	12	14	27	1.81
587412--588335	338	2.6	348	85	5	1199	44	12	15	28	1.82
588976--589671	198	3.5	197	81	6	728	40	15	13	30	1.86
589691--589735	23	2.0	23	86	0	63	37	15	8	37	1.79
592202--592274	30	2.4	30	88	0	110	30	23	19	27	1.98
601377--601419	21	2.0	22	86	13	63	37	11	2	48	1.52
605949--605988	20	2.0	20	90	0	62	37	2	7	52	1.43
608002--608040	19	2.0	19	90	5	60	43	33	2	20	1.65
612854--612912	29	2.0	29	96	0	109	23	11	13	50	1.74
615335--615401	29	2.3	29	84	0	80	37	23	10	28	1.88
615801--615843	16	2.7	16	92	0	68	46	9	0	44	1.35
616400--616448	24	2.0	24	88	7	73	38	6	8	46	1.58
616527--616588	29	2.1	29	94	5	108	33	9	9	46	1.69
616462--616709	124	2.0	124	85	6	335	37	11	10	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
616651--616714	29	2.2	29	91	0	101	35	6	10	46	1.64
632085--632161	37	2.1	36	83	9	93	46	1	3	48	1.28
632307--632344	20	1.9	20	88	0	58	21	26	10	42	1.85
635900--635941	2	21.0	2	100	0	84	50	0	0	50	1.00
643140--643193	14	3.9	14	90	0	81	24	35	29	11	1.90
643140--643193	28	1.9	28	92	0	90	24	35	29	11	1.90
643301--643360	23	2.6	23	86	5	77	10	36	26	26	1.88
643833--644105	29	9.5	28	73	12	166	38	5	0	55	1.29
643833--644105	57	4.8	56	81	7	307	38	5	0	55	1.29
643833--644105	114	2.4	113	86	6	372	38	5	0	55	1.29
643813--644103	85	3.4	86	75	9	249	37	6	0	55	1.30
644089--644135	14	3.2	14	85	11	67	46	2	0	51	1.13
644144--644357	29	7.3	29	72	14	147	52	3	6	37	1.42
644144--644352	60	3.5	58	74	13	153	52	3	6	37	1.43
653128--653166	19	2.1	19	85	9	53	61	0	0	38	0.96
653913--653956	21	2.0	22	86	4	63	36	0	2	61	1.09
653921--653981	25	2.4	25	81	8	70	34	1	0	63	1.04
656240--656265	2	13.0	2	100	0	52	50	0	0	50	1.00
656229--656416	99	1.9	101	97	2	362	34	11	7	45	1.70
660617--660660	3	14.7	3	100	0	88	31	0	0	68	0.90
660824--661251	213	2.0	214	99	0	849	45	17	12	25	1.83
661765--661840	31	2.5	31	91	0	125	38	15	21	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
663880--663929	19	2.6	19	90	0	73	42	20	0	38	1.52
663927--663956	15	2.0	15	93	0	51	26	26	3	43	1.70
665064--665136	30	2.4	30	88	0	101	30	24	19	26	1.98
665122--665186	31	2.1	31	82	0	76	33	24	18	23	1.96
665968--666005	20	1.9	20	94	0	67	23	21	21	34	1.97
666013--666153	64	2.2	63	82	7	169	25	24	17	32	1.97
670646--670686	10	4.1	10	87	9	57	21	9	19	48	1.77
670647--670689	21	2.1	20	91	4	68	23	9	18	48	1.76
670657--670699	21	2.0	21	86	0	59	23	11	20	44	1.84
672800--672833	15	2.3	15	94	0	59	32	32	20	14	1.93
672918--672998	29	2.8	29	94	3	137	18	22	16	43	1.88
679571--679604	15	2.3	15	89	0	50	32	32	17	17	1.94
679689--679798	29	3.8	29	97	2	204	17	21	16	44	1.86
683225--683263	19	2.1	19	85	9	53	41	10	25	23	1.86
683638--683749	31	3.6	31	97	0	206	19	19	21	39	1.93
692715--692754	2	20.0	2	84	0	53	50	7	0	42	1.30
698316--698666	175	2.0	175	100	0	702	33	8	10	47	1.68
698754--698989	119	2.0	116	82	4	285	33	3	11	50	1.57
699240--699395	77	2.0	79	83	13	198	39	3	10	46	1.55
702057--702112	22	2.5	23	80	8	71	42	17	10	28	1.83
713581--713655	32	2.3	32	93	0	132	21	18	21	38	1.93
723356--723407	21	2.5	21	96	0	95	57	17	13	11	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
730622--730658	19	1.9	19	100	0	74	62	0	16	21	1.33
733350--733384	18	1.9	18	94	0	61	42	0	0	57	0.99
733448--733501	24	2.2	24	83	9	74	61	3	0	35	1.14
733428--733496	32	2.3	29	85	7	84	60	1	0	37	1.06
734504--734563	31	1.9	31	89	0	93	41	20	11	26	1.86
736396--736432	5	7.4	5	100	0	74	21	78	0	0	0.75
736613--736822	55	3.9	55	83	6	261	28	26	17	27	1.98
736621--736814	106	1.8	106	89	2	309	29	26	17	26	1.98
736797--737366	54	10.6	54	94	0	915	20	26	17	35	1.95
737366--737445	37	2.2	37	84	4	99	18	20	16	45	1.86
737728--737855	36	3.5	36	81	8	127	26	20	18	34	1.96
737762--737866	36	2.9	37	82	4	133	26	17	20	36	1.94
742611--742761	72	2.1	72	93	0	257	23	27	12	36	1.91
757381--757427	2	23.5	2	100	0	94	51	0	0	48	1.00
759338--760839	7	216.6	7	98	1	2897	0	14	57	28	1.38
760837--776496	7	2280.6	7	94	5	27826	14	0	43	41	1.46

Tables:   1   2   3

The End!