genome.fa.s8286.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008286.1 Hibiscus syriacus cultivar Beakdansim tig00110949_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  504059

Tables:   1   2   3   

This is table  3  of  3  ( 300 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428341--428558	103	2.1	103	94	0	382	26	13	22	37	1.91
428565--428641	23	3.3	23	85	1	100	25	19	20	33	1.96
431325--431387	11	5.9	11	69	14	51	57	3	1	38	1.24
431954--432007	28	2.0	27	88	3	81	46	27	1	24	1.63
434071--434182	11	9.7	11	75	11	73	27	24	20	27	1.99
434080--434112	12	2.8	12	100	0	66	33	30	18	18	1.94
434074--434157	23	3.7	23	73	12	82	30	25	19	25	1.98
437927--437971	16	2.8	16	96	0	81	17	35	4	42	1.70
441816--441872	30	1.9	30	96	0	105	35	0	33	31	1.58
450581--450633	18	2.8	19	72	16	56	66	3	0	30	1.10
452793--453090	103	2.9	102	82	6	350	30	17	14	36	1.90
452997--453212	67	3.2	67	88	3	310	30	18	13	37	1.89
454272--454305	16	2.1	16	88	0	50	20	0	20	58	1.39
456089--456163	35	2.1	35	90	0	114	33	28	28	10	1.90
456241--456331	24	3.8	24	83	2	121	37	18	16	27	1.92
456253--456315	23	2.7	24	87	2	92	36	22	15	25	1.94
458611--458665	8	6.5	8	83	12	58	25	25	32	16	1.96
458668--458713	13	3.5	13	93	0	74	17	17	45	19	1.85
460373--460419	18	2.7	18	80	3	60	36	8	27	27	1.86
460837--461337	232	2.2	227	86	6	713	41	18	11	27	1.86
465157--465181	9	2.8	9	100	0	50	12	8	32	48	1.69
465646--465710	3	20.7	3	87	9	94	66	0	1	32	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465946--466352	40	9.5	41	69	14	208	25	19	29	25	1.99
465858--466235	129	2.9	129	96	0	684	24	19	30	26	1.98
465858--466364	89	5.9	86	77	12	393	24	19	30	25	1.98
466403--466464	28	2.2	28	88	5	90	51	12	11	24	1.72
466939--467013	31	2.4	30	82	8	80	40	13	14	32	1.85
467046--467125	40	2.0	40	87	4	117	37	11	20	31	1.87
467107--467231	64	2.0	64	85	4	173	41	10	14	33	1.80
467453--467609	68	2.3	68	94	3	273	43	12	12	31	1.79
467581--467637	27	2.1	27	90	6	89	43	15	8	31	1.78
467722--467810	29	3.1	29	88	8	128	44	12	12	30	1.79
467727--467824	28	3.4	27	79	13	99	47	14	12	25	1.78
468147--468343	105	1.9	105	88	2	297	39	10	19	29	1.86
468310--468446	36	3.8	36	82	5	170	35	13	19	31	1.90
468310--468444	71	1.9	72	87	4	202	34	13	20	31	1.91
468789--468838	4	13.2	4	79	12	61	30	0	18	52	1.46
469981--470014	12	2.8	12	91	8	52	0	11	8	79	0.94
470613--470694	26	3.4	26	69	19	86	40	9	25	24	1.86
470601--470694	46	2.1	45	87	2	134	38	9	25	26	1.87
472093--472185	31	3.0	31	98	1	177	61	9	13	15	1.57
475539--475563	9	2.8	9	100	0	50	12	8	32	48	1.69
476037--476089	3	16.7	3	84	11	70	66	0	1	32	1.03
477334--477430	40	2.4	39	81	3	113	41	10	11	37	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488335--488386	20	2.5	21	84	6	79	26	17	26	28	1.97
496154--496178	12	2.1	12	100	0	50	8	20	40	32	1.81
498234--498270	19	2.0	19	94	5	67	48	10	21	18	1.78
498233--498276	19	2.6	16	83	16	61	45	11	20	22	1.83
501996--502037	17	2.3	18	80	8	50	54	4	2	38	1.34
502949--503002	12	3.9	14	77	22	53	61	0	0	38	0.96
502953--503003	19	2.7	20	85	11	72	62	0	0	37	0.95
502947--503002	8	6.6	8	82	17	53	60	0	0	39	0.97
502947--503002	15	3.9	15	80	19	66	60	0	0	39	0.97
503336--503391	17	3.3	17	72	18	53	19	19	8	51	1.73
503351--503464	40	2.9	40	87	6	155	20	21	8	50	1.75
503405--503461	18	3.3	16	68	17	51	22	22	8	45	1.80
503224--503576	182	1.9	189	85	6	497	25	18	12	43	1.84
503408--504026	113	5.5	112	93	2	946	26	19	14	38	1.91
503408--504026	225	2.8	226	89	3	977	26	19	14	38	1.91
503411--504026	338	1.8	333	90	4	1006	26	19	14	38	1.91

Tables:   1   2   3

The End!