genome.fa.s8294.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008294.1 Hibiscus syriacus cultivar Beakdansim tig00110959_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  362436

Tables:   1   2   

This is table  2  of  2  ( 196 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253354--253395	21	2.0	21	90	0	66	26	28	23	21	1.99
253916--253976	22	2.8	22	84	0	77	22	26	19	31	1.98
255694--255787	26	3.4	28	72	20	81	41	1	6	51	1.34
255972--256031	19	3.4	17	77	11	66	46	8	0	45	1.33
255995--256024	15	1.9	16	93	6	53	46	6	0	46	1.29
256442--256549	50	2.3	50	82	9	138	50	10	0	38	1.36
256527--256575	21	2.3	21	85	3	71	53	16	0	30	1.43
256705--256750	19	2.4	19	92	0	74	26	17	4	52	1.63
256795--256856	25	2.5	24	89	2	88	29	9	27	33	1.88
256795--256867	24	3.0	25	85	4	103	30	10	26	32	1.90
257052--257121	28	2.5	28	92	0	95	18	21	37	22	1.94
259492--259584	36	2.6	36	91	0	141	20	17	22	39	1.92
268032--268065	16	2.1	16	100	0	68	44	5	0	50	1.26
268093--268154	32	1.9	32	84	12	83	25	0	11	62	1.28
268159--268197	19	2.1	19	85	0	51	33	0	12	53	1.39
268130--268255	62	2.0	63	89	7	195	29	0	13	56	1.43
268832--268880	19	2.6	18	78	9	53	18	4	4	73	1.15
268936--268976	20	2.0	21	86	13	59	21	2	0	75	0.92
269914--269955	19	2.2	19	95	0	75	30	4	11	52	1.59
270653--270703	2	26.5	2	76	7	52	50	0	0	49	1.00
270655--270751	6	14.4	7	76	19	50	47	0	0	52	1.00
270809--270872	30	2.1	31	88	2	94	21	35	9	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
274895--274939	21	2.1	21	87	0	63	31	28	24	15	1.96
275503--275549	23	2.0	24	91	4	78	44	0	21	34	1.52
275722--275877	31	5.0	31	93	1	260	21	19	21	37	1.95
278866--278910	21	2.1	21	87	0	63	31	28	24	15	1.96
279476--279522	23	2.0	24	91	4	78	44	0	21	34	1.52
279702--279826	31	4.0	31	91	2	198	21	20	21	36	1.95
285929--285980	6	8.5	6	88	12	63	88	0	0	11	0.52
285931--285978	21	2.3	20	96	3	87	87	0	0	12	0.54
285929--285980	1	52.0	1	76	0	50	88	0	0	11	0.52
289436--289498	29	2.1	30	91	2	101	47	6	4	41	1.50
289955--290008	26	2.2	24	93	6	90	51	0	7	40	1.30
291676--291758	34	2.5	32	77	14	80	62	1	0	36	1.03
291595--291851	143	1.8	141	84	5	356	50	7	6	36	1.55
291848--291892	2	23.0	2	95	4	83	51	0	0	48	1.00
291917--291964	21	2.2	22	82	10	64	68	4	4	22	1.24
293340--293433	47	2.0	46	91	6	154	28	17	23	30	1.97
293449--293600	46	3.3	46	92	3	243	28	19	23	28	1.98
293629--293732	45	2.3	45	84	0	136	31	19	23	25	1.98
293505--293854	122	2.9	122	93	1	576	32	20	22	25	1.98
293629--293998	167	2.2	167	94	0	641	31	19	23	25	1.98
293751--293899	45	3.3	45	90	0	217	31	19	23	25	1.98
293340--293990	289	2.2	289	91	2	1040	31	19	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
299015--299047	16	2.0	17	94	5	59	3	18	0	78	0.87
301781--301811	16	1.9	16	93	0	53	54	6	12	25	1.62
304775--304814	20	2.0	20	85	4	55	37	0	2	60	1.11
305083--305147	27	2.4	27	79	7	69	69	3	3	24	1.17
308298--308356	29	2.0	29	100	0	118	49	13	13	23	1.78
312277--312309	16	2.1	16	100	0	66	63	24	6	6	1.40
312442--312693	126	2.0	129	93	4	440	52	13	8	25	1.69
313182--313213	16	1.9	17	93	6	57	25	18	25	31	1.98
332448--332500	5	9.8	5	76	15	52	7	22	50	18	1.72
332441--332501	17	3.3	17	79	20	77	11	22	47	18	1.80
332414--332451	7	5.4	7	96	0	67	26	26	28	18	1.98
332434--332500	22	3.0	22	93	4	107	11	23	46	17	1.82
332497--332595	9	10.3	9	77	10	81	29	27	27	16	1.97
332522--332596	29	2.5	31	89	8	120	29	26	26	17	1.97
332497--332595	19	5.2	19	76	17	80	29	27	27	16	1.97
339747--339784	7	5.4	7	96	0	67	26	26	28	18	1.98
339781--339838	5	10.8	5	78	14	62	6	22	51	18	1.70
339774--339838	22	3.0	22	100	0	130	9	23	49	18	1.76
339835--339933	9	10.3	9	77	10	81	29	27	27	16	1.97
339860--339934	29	2.5	31	89	8	120	29	26	26	17	1.97
339835--339933	19	5.2	19	76	17	80	29	27	27	16	1.97
341838--341880	14	3.1	14	93	0	68	62	11	9	16	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341844--341901	14	4.1	14	86	6	64	56	15	15	12	1.67
341833--341899	24	2.8	24	90	4	100	56	16	13	13	1.67
341907--341986	40	1.9	40	85	7	106	36	13	11	38	1.81
344935--345016	22	3.7	22	88	0	101	19	36	15	28	1.93
345257--345323	29	2.3	28	82	12	82	43	5	2	47	1.43
346188--346220	15	2.3	15	89	5	50	78	0	6	15	0.93
346440--346490	26	2.0	26	100	0	102	47	0	1	50	1.12
346445--346494	13	3.9	13	72	12	50	54	0	2	44	1.11
356195--356232	18	2.1	19	95	5	69	52	10	21	15	1.72
356986--357030	2	22.5	2	100	0	90	48	0	0	51	1.00

Tables:   1   2

The End!