Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008317.1 Hibiscus syriacus cultivar Beakdansim tig00111014_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  312147

Tables:   1   2   

This is table  2  of  2  ( 139 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
286084--286189
19
5.9
18
76
16
103
42
23
21
12
1.87
286067--286200
39
3.6
37
69
18
102
42
25
19
12
1.86
286156--286200
18
2.4
18
88
3
63
46
26
17
8
1.78
286217--286274
14
3.9
14
79
16
71
8
17
25
48
1.75
286201--286290
32
2.8
32
96
1
162
11
18
23
46
1.81
286275--286329
20
2.8
19
83
8
65
16
23
23
36
1.94
286802--286846
18
2.5
18
85
0
63
15
15
42
26
1.87
288156--288193
20
1.9
20
88
0
58
50
21
15
13
1.78
288457--288500
22
2.0
22
95
0
79
18
15
45
20
1.85
288688--288780
20
4.7
20
79
0
87
23
17
24
34
1.96
288668--288781
20
5.7
20
77
3
86
23
16
23
35
1.95
288708--288784
40
1.9
40
83
0
100
22
15
22
40
1.91
288770--288864
40
2.3
41
96
1
174
18
24
17
38
1.92
288770--288861
21
4.6
20
75
6
87
18
25
18
38
1.93
290692--290761
35
2.0
35
94
0
122
25
22
20
31
1.98
295742--295775
5
6.8
5
96
0
50
73
0
5
20
1.04
307211--307259
21
2.4
20
76
6
53
53
2
6
38
1.38
307872--307903
13
2.6
13
90
9
50
46
0
0
53
1.00
309371--309485
52
2.2
52
81
1
133
35
6
0
56
1.32

Tables:   1   2

The End!