genome.fa.s8328.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008328.1 Hibiscus syriacus cultivar Beakdansim tig00111036_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  520947

Tables:   1   2   

This is table  2  of  2  ( 177 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353333--353360	2	14.0	2	100	0	56	0	50	0	50	1.00
353360--353402	2	21.5	2	100	0	86	48	0	0	51	1.00
359802--359929	62	2.0	63	90	1	204	17	32	7	42	1.78
364534--364595	2	31.0	2	100	0	124	50	0	0	50	1.00
372329--372355	2	13.5	2	100	0	54	51	0	0	48	1.00
377266--377290	2	12.5	2	100	0	50	52	0	0	48	1.00
377641--377694	2	27.0	2	100	0	108	50	0	0	50	1.00
378442--378481	18	2.2	18	86	0	53	55	2	0	42	1.13
385176--385235	23	2.6	23	84	7	77	61	15	8	15	1.55
385421--385470	14	3.7	14	84	10	68	66	20	4	10	1.38
388626--388670	21	2.1	21	87	0	63	35	6	4	53	1.47
391684--391724	20	2.2	18	86	8	55	9	7	7	75	1.18
391901--391974	31	2.4	31	93	0	121	32	13	6	47	1.69
399493--399739	120	2.1	120	88	1	361	46	9	15	28	1.77
405729--405851	62	2.0	62	88	0	183	38	5	13	42	1.69
407865--408008	60	2.4	59	78	11	150	38	4	21	35	1.73
408705--409911	352	3.3	361	86	6	1596	33	13	8	44	1.74
410871--410942	31	2.3	31	85	4	101	47	1	1	50	1.18
411326--411426	53	1.9	53	87	0	148	32	8	10	47	1.70
415863--415921	23	2.6	23	97	2	111	16	22	44	16	1.87
416268--416307	19	2.1	19	100	0	80	42	17	0	40	1.49
418504--418529	8	3.2	8	100	0	52	0	0	53	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424799--424845	15	3.1	15	76	11	51	55	2	0	42	1.12
425037--425077	19	2.2	18	86	8	55	29	19	0	51	1.47
425008--425146	60	2.3	60	82	4	165	34	19	2	43	1.66
425252--425389	58	2.3	61	83	6	185	41	3	22	32	1.71
425256--425412	59	2.7	58	82	6	165	41	3	21	33	1.69
431319--431343	2	12.5	2	100	0	50	48	0	0	52	1.00
436995--437050	2	28.0	2	100	0	112	50	0	0	50	1.00
439221--439279	21	2.8	21	84	0	82	22	40	28	8	1.83
439639--439828	75	2.5	80	80	16	231	48	3	6	42	1.44
439639--439936	39	8.2	38	76	17	241	46	3	6	43	1.46
439810--439925	33	3.6	31	75	13	110	45	4	5	44	1.45
442874--442918	19	2.4	19	92	3	74	11	13	8	66	1.44
446309--447049	165	4.5	164	85	3	855	29	24	21	24	1.99
446291--446987	84	8.4	81	84	5	783	29	25	21	23	1.99
447712--447945	39	6.7	37	77	15	191	47	3	5	44	1.42
447819--447934	33	3.6	31	75	13	110	45	4	5	44	1.45
447777--447949	32	5.2	32	74	16	106	46	3	5	45	1.42
455024--455099	36	2.1	36	85	7	100	47	1	3	47	1.29
455245--455282	20	1.9	20	88	0	58	21	26	10	42	1.85
458924--459021	20	4.8	20	77	3	79	18	19	24	37	1.94
458945--459037	20	4.6	20	78	2	105	12	21	26	38	1.90
459029--459081	22	2.4	22	100	0	106	16	18	28	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460080--460109	16	1.9	15	93	6	51	43	0	0	56	0.99
460816--460857	20	2.2	19	87	8	59	54	2	0	42	1.13
487084--487138	26	2.2	26	81	12	62	45	7	18	29	1.76
487693--487811	39	3.1	39	73	12	102	36	17	1	43	1.59
487844--487894	26	2.0	26	81	11	61	33	3	1	60	1.26
489347--489431	42	2.0	41	95	2	152	27	16	23	32	1.96
490215--490263	26	2.0	24	84	8	62	55	2	0	42	1.11
492067--492093	2	13.5	2	100	0	54	51	0	0	48	1.00
498387--498459	31	2.4	31	90	2	112	26	9	9	54	1.63
499734--499758	6	4.2	6	100	0	50	0	16	36	48	1.46
500574--500604	16	1.9	16	93	0	53	29	9	0	61	1.28
510266--510296	2	15.5	2	100	0	62	51	0	0	48	1.00
516260--516321	29	2.0	30	81	9	72	59	0	8	32	1.26

Tables:   1   2

The End!