genome.fa.s8329.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008329.1 Hibiscus syriacus cultivar Beakdansim tig00111037_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  291406

Tables:   1   2   

This is table  1  of  2  ( 141 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380--415	14	2.6	14	95	0	63	33	0	22	44	1.53
522--623	20	5.6	19	81	16	135	44	17	23	14	1.86
651--957	19	17.4	19	80	16	376	14	20	18	46	1.83
651--890	71	3.4	71	86	11	373	14	20	17	47	1.83
614--957	142	2.5	139	90	4	525	15	20	18	45	1.85
651--929	52	5.2	52	93	4	388	14	21	17	46	1.83
3206--3230	12	2.1	12	100	0	50	0	28	0	72	0.86
3405--3451	24	2.0	24	87	8	69	38	21	14	25	1.92
4133--4501	20	18.5	20	85	4	440	20	18	26	35	1.95
4557--4608	20	2.6	20	96	0	95	21	13	26	38	1.90
8740--8773	15	2.2	16	89	5	52	47	0	0	52	1.00
16146--16216	34	2.1	34	84	5	90	36	12	12	38	1.82
20308--20336	15	1.9	15	100	0	58	31	6	0	62	1.22
20695--20767	20	3.6	20	74	20	71	39	2	1	56	1.22
28550--28690	41	3.5	41	90	0	212	29	27	17	25	1.98
28511--28706	20	9.7	20	81	6	189	29	27	17	26	1.97
28724--28766	20	2.2	20	95	0	77	39	20	9	30	1.84
28772--28879	21	5.2	21	81	7	123	30	26	15	26	1.96
28772--28879	41	2.6	41	85	4	128	30	26	15	26	1.96
28950--29023	20	3.7	20	81	3	85	35	25	12	27	1.91
38496--38585	29	3.1	29	67	16	69	34	20	2	43	1.64
38830--38942	60	1.9	59	85	5	156	43	7	13	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40679--40731	19	2.6	20	73	8	54	60	0	1	37	1.08
41938--42017	32	2.5	32	80	9	101	40	31	10	18	1.84
42466--42508	21	2.2	20	84	12	54	41	9	9	39	1.69
42672--42751	32	2.5	32	80	9	101	40	31	10	18	1.84
43416--43496	32	2.6	32	80	9	103	39	30	9	19	1.84
41277--45714	744	6.0	744	96	2	8236	28	16	17	37	1.92
44155--44234	32	2.5	32	80	9	101	40	31	10	18	1.84
44897--44974	31	2.5	32	78	13	92	39	32	10	17	1.84
45421--45463	21	2.2	20	84	12	54	41	9	9	39	1.69
45627--45706	32	2.5	32	76	9	92	41	30	10	18	1.83
50083--50216	66	2.0	66	97	1	252	44	8	18	28	1.80
49998--50337	187	1.8	187	86	1	493	42	10	17	29	1.81
50148--50963	122	6.7	121	87	2	1132	44	10	16	29	1.79
50148--50963	245	3.3	244	90	1	1269	44	10	16	29	1.79
63818--63954	62	2.2	62	90	3	231	43	16	9	30	1.79
64831--64872	7	6.3	7	86	5	52	0	14	0	85	0.59
64833--64869	11	3.3	11	92	3	56	0	13	0	86	0.57
64818--64872	26	2.1	26	89	0	83	3	12	0	83	0.77
64818--64861	18	2.4	19	92	3	72	4	9	0	86	0.70
67726--67778	26	2.0	27	85	10	74	35	28	15	20	1.93
68084--68135	19	2.6	20	75	6	61	59	0	1	38	1.08
69349--69428	32	2.5	32	76	9	92	41	30	10	18	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73864--75252	122	11.5	121	83	4	1674	43	9	15	30	1.79
73864--75252	241	5.7	244	87	2	1849	43	9	15	30	1.79
75341--75379	2	19.5	2	100	0	78	48	0	0	51	1.00
95092--95415	159	2.0	159	88	1	479	29	16	21	33	1.95
109850--109896	23	2.0	25	87	8	71	25	0	2	72	0.96
114441--114485	22	2.0	22	84	16	58	35	13	4	46	1.63
126199--126228	7	4.4	7	91	8	53	66	0	0	33	0.92
126202--126228	13	2.1	13	100	0	54	70	0	0	29	0.88
130663--130706	22	2.0	22	86	0	61	36	9	4	50	1.55
134567--134746	95	1.9	94	90	2	290	45	6	8	40	1.61
136664--136731	34	2.0	34	91	0	109	38	19	5	36	1.76
140819--140856	19	2.0	19	89	0	58	21	15	28	34	1.94
145389--145426	19	2.0	19	89	0	58	21	15	28	34	1.94
146825--147033	20	10.4	20	82	5	226	36	25	17	20	1.94
147726--147772	24	2.0	24	87	8	69	25	14	21	38	1.92
147947--147971	12	2.1	12	100	0	50	72	0	28	0	0.86
150251--150430	33	5.2	34	75	16	165	46	18	22	13	1.83
150265--150487	53	4.2	52	95	1	367	45	17	21	14	1.85
150265--150487	19	12.7	19	75	19	225	45	17	21	14	1.85
150251--150430	86	2.1	84	86	12	242	46	18	22	13	1.83
150318--150478	33	4.7	33	72	19	132	46	17	21	14	1.83
150477--150590	50	2.2	51	92	7	196	14	22	18	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150496--150590	19	5.4	19	79	20	125	14	21	17	46	1.84
150555--150598	19	2.3	19	92	0	70	18	20	15	45	1.85
150696--150732	14	2.6	14	91	0	65	45	21	0	32	1.52
150799--150834	12	3.0	12	83	0	54	63	16	0	19	1.30
152655--152827	19	9.6	19	78	12	159	45	23	20	10	1.81
152749--152805	14	3.7	14	75	20	51	43	22	22	10	1.84
152730--152822	33	2.8	33	95	0	168	46	21	21	10	1.81
152689--152827	52	2.7	52	74	8	147	46	23	21	9	1.80
152839--152897	14	3.9	14	76	20	64	6	16	28	47	1.72
152823--152946	33	3.7	33	89	1	176	9	17	26	45	1.79
152823--152881	19	3.4	19	77	22	83	6	15	30	47	1.71
152872--152928	14	3.7	14	72	20	51	10	22	22	43	1.84
153044--153545	93	5.4	93	99	0	995	45	19	13	21	1.84
155223--155287	21	3.1	21	80	4	87	49	15	24	10	1.76
155264--155345	33	2.5	33	96	4	148	50	18	21	9	1.76
155362--155418	14	3.7	14	75	20	60	8	24	22	43	1.81
155346--155425	33	2.4	33	95	0	142	8	21	22	47	1.78
155406--155479	21	3.5	21	80	7	96	14	20	17	47	1.83
155559--155629	33	2.2	33	94	0	124	47	16	23	11	1.79
156005--156159	20	7.7	20	86	4	231	20	18	27	32	1.96
156004--156197	40	4.8	40	84	4	230	19	18	27	35	1.94
156005--156197	60	3.2	60	82	5	237	19	18	27	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156691--156722	2	16.0	2	100	0	64	50	0	0	50	1.00
165038--165101	25	2.5	26	75	10	60	26	3	7	62	1.38
166888--166920	11	3.0	11	95	0	57	15	0	30	54	1.41
172214--172248	2	17.5	2	100	0	70	51	0	0	48	1.00
172462--172647	92	2.0	95	84	8	245	33	14	6	44	1.72
172554--173477	122	7.6	120	81	7	1008	30	16	9	43	1.80
172345--172770	214	2.0	215	84	4	554	32	14	8	45	1.74
172562--173479	242	3.8	242	84	5	1140	30	16	9	43	1.80
190282--190311	15	2.0	15	100	0	60	46	6	6	40	1.56
196393--196431	15	2.6	15	83	0	51	43	5	30	20	1.73
201249--201284	15	2.4	15	90	0	54	50	5	22	22	1.70
202286--202319	16	2.1	16	94	0	59	20	41	11	26	1.87
203114--203153	21	1.9	21	94	0	71	32	27	15	25	1.95
203115--203323	64	3.2	65	79	7	194	33	24	15	26	1.95
203311--203362	19	2.7	19	96	0	95	21	30	21	26	1.98
209148--209228	24	3.6	22	77	14	85	24	25	22	27	2.00
210547--210607	21	2.9	21	97	0	113	32	29	14	22	1.94
210569--210728	64	2.5	64	79	5	178	35	23	15	26	1.94
210750--210797	19	2.6	19	83	9	55	25	29	18	27	1.98
212043--212112	24	3.0	24	77	12	74	34	25	21	18	1.96
212087--212177	25	3.7	25	86	1	130	31	23	20	24	1.98
212079--212185	25	4.4	25	81	6	114	33	23	20	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
212335--212371	16	2.2	17	95	4	67	51	18	0	29	1.47
219098--219143	2	23.0	2	100	0	92	50	0	0	50	1.00
219217--219441	116	1.9	120	82	7	289	32	13	8	44	1.75
219230--219659	213	2.0	213	85	5	580	32	14	8	44	1.76
219453--220361	122	7.5	121	84	6	1049	29	16	9	44	1.79
231022--231074	14	4.1	14	72	18	51	58	15	11	15	1.63
231022--231106	24	3.6	24	76	12	86	55	16	10	17	1.69
237995--238871	122	7.2	121	84	3	1122	29	16	10	43	1.81
237995--238872	243	3.6	241	86	4	1205	29	16	10	43	1.81
243490--243536	21	2.2	21	85	7	60	61	2	0	36	1.08

Tables:   1   2