genome.fa.s8330.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008330.1 Hibiscus syriacus cultivar Beakdansim tig00111038_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159554

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4029--4059	11	2.8	11	100	0	62	90	0	9	0	0.46
4029--4065	6	6.5	6	84	12	51	86	0	13	0	0.57
6252--6432	91	2.0	91	88	4	267	29	14	20	35	1.93
9865--11039	76	15.5	76	99	0	2280	21	19	22	36	1.95
10981--11128	45	3.3	45	94	0	251	22	19	20	37	1.95
11255--11325	3	24.0	3	80	8	74	38	1	0	60	1.06
12013--12039	14	1.9	14	100	0	54	0	29	59	11	1.32
16202--16420	107	2.0	107	100	0	438	38	15	17	28	1.90
21792--22125	83	4.0	82	76	6	246	30	14	21	33	1.93
21845--22066	41	5.4	41	71	11	148	31	15	22	30	1.95
28151--28257	44	2.4	44	82	3	126	32	26	14	27	1.94
28161--28285	44	2.8	44	80	0	124	31	27	15	26	1.96
29348--29397	20	2.5	20	86	0	73	24	18	20	38	1.93
29837--29900	23	2.8	23	82	0	83	7	17	28	46	1.75
31199--31508	68	4.6	68	92	0	521	46	11	13	27	1.78
31249--31425	31	5.3	31	66	19	97	48	11	13	26	1.76
31280--31458	37	5.2	36	64	15	108	46	12	14	26	1.80
32021--32080	22	2.7	22	84	0	84	15	18	16	50	1.79
34136--34257	22	5.5	22	95	0	217	27	7	9	55	1.59
34783--34838	25	2.2	25	100	0	112	44	14	3	37	1.62
34932--34980	24	2.0	24	88	11	73	63	0	0	36	0.95
38665--38704	21	1.9	21	89	0	62	30	10	7	52	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50615--50668	23	2.4	22	93	6	90	40	18	11	29	1.85
55565--55614	22	2.3	22	89	3	75	46	10	6	38	1.62
58624--58676	24	2.2	25	83	10	74	37	1	1	58	1.20
58631--58675	23	1.9	24	95	4	83	42	0	2	55	1.12
67247--67295	23	2.1	23	100	0	98	16	18	30	34	1.93
67729--67754	3	8.7	3	100	0	52	30	0	0	69	0.89
70944--71496	39	14.3	39	90	1	790	36	16	18	28	1.93
70944--71571	78	8.1	78	88	3	736	36	16	17	28	1.92
71581--71727	77	1.9	76	87	4	215	38	12	14	33	1.85
79064--79617	39	14.3	39	89	0	772	36	16	18	28	1.93
79157--79685	39	13.5	41	85	6	286	37	17	16	28	1.91
79702--79848	77	1.9	76	83	4	188	37	14	14	33	1.87
84896--85415	39	13.3	39	84	6	590	35	16	19	28	1.93
85500--85646	77	1.9	76	87	1	213	38	14	13	33	1.85
93051--93599	39	14.3	39	90	2	781	36	16	18	28	1.93
93143--93667	39	13.5	41	86	6	293	37	16	16	28	1.91
99590--99631	18	2.4	17	81	14	50	38	7	2	52	1.42
101311--101861	39	14.3	39	90	1	808	36	16	18	28	1.93
109437--109990	39	14.3	39	89	0	736	36	16	17	29	1.92
109530--110058	39	13.5	41	87	5	302	37	17	16	29	1.91
114002--114031	2	15.0	2	100	0	60	50	0	0	50	1.00
115413--115473	19	3.2	19	63	9	52	32	21	24	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115248--115803	39	14.3	39	87	4	696	35	17	19	28	1.94
119534--119587	20	2.8	18	76	15	54	57	7	12	22	1.60
123479--124032	39	14.3	39	89	0	790	36	16	18	28	1.93
123530--124100	39	14.6	41	86	4	314	37	17	16	28	1.92
124117--124263	77	1.9	76	86	4	206	38	12	15	33	1.85
133204--133248	20	2.3	19	84	3	54	35	0	2	62	1.08
133199--133254	29	2.0	30	83	13	75	37	0	1	60	1.07
133247--133347	3	33.7	3	89	0	157	61	0	2	35	1.11
133665--134188	227	2.3	226	96	1	944	29	18	13	38	1.89
133665--134188	113	4.6	113	96	0	944	29	18	13	38	1.89
134940--135222	83	3.4	82	92	2	460	37	21	13	27	1.90
135171--135271	49	2.1	49	96	3	186	39	20	16	22	1.92
136429--136470	17	2.6	16	78	10	50	4	14	0	80	0.86
136435--136488	18	2.9	18	86	2	72	3	14	0	81	0.82
136425--136491	20	3.3	19	79	12	64	2	16	0	80	0.83
136424--136492	13	5.1	13	74	19	52	2	18	0	78	0.88
149295--149390	3	32.7	3	85	4	133	61	1	3	34	1.19
154033--154095	25	2.5	25	94	5	110	17	9	4	68	1.35
155013--155039	2	13.5	2	100	0	54	48	0	0	51	1.00
157209--157320	35	3.2	35	87	0	161	41	21	0	35	1.59
157989--158174	57	3.3	57	92	0	309	29	16	19	34	1.94
158146--158194	20	2.5	20	89	0	80	28	16	24	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158219--158291	20	3.7	20	85	3	85	23	17	19	39	1.92
158084--158272	77	2.5	77	84	5	240	28	16	19	35	1.93
158283--158405	56	2.2	58	89	2	187	26	15	23	34	1.94
158283--158636	192	1.8	192	92	1	593	26	15	22	35	1.94
158417--158597	57	3.2	57	88	0	272	27	14	24	34	1.94
158589--158641	21	2.6	21	85	5	65	24	16	22	35	1.95
159133--159190	28	2.1	28	84	12	75	43	5	5	46	1.48
159244--159350	34	3.2	33	85	6	126	33	0	20	44	1.58

Tables:   1

The End!