genome.fa.s8340.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008340.1 Hibiscus syriacus cultivar Beakdansim tig00111064_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  409852

Tables:   1   2   

This is table  1  of  2  ( 171 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17666--17702	20	1.9	19	89	10	58	45	10	24	18	1.81
17850--17919	37	1.9	37	82	8	90	48	4	1	45	1.30
21940--21972	4	8.0	4	96	3	57	24	0	0	75	0.80
31072--31125	27	2.0	27	100	0	108	14	18	22	44	1.86
51930--51955	2	13.0	2	100	0	52	50	0	0	50	1.00
52671--52732	30	2.1	29	93	3	106	38	16	19	25	1.92
62215--62273	29	2.0	29	100	0	118	30	23	3	42	1.71
62730--62765	2	18.0	2	100	0	72	50	0	0	50	1.00
68565--68617	21	2.5	20	81	3	61	26	0	7	66	1.18
74364--74395	16	2.0	16	100	0	64	31	12	12	43	1.80
75549--75615	33	2.0	33	97	0	125	23	17	28	29	1.97
75562--75611	16	3.0	17	66	16	50	20	20	28	32	1.97
75672--75713	20	2.1	20	90	0	66	16	9	26	47	1.77
75714--75851	44	3.1	44	89	2	206	39	6	22	31	1.80
77248--77279	15	2.1	15	100	0	64	40	18	12	28	1.87
77302--77532	115	2.0	115	96	0	426	24	19	15	41	1.89
77871--77912	14	3.0	14	96	0	75	21	33	7	38	1.81
79208--79237	12	2.5	12	94	0	51	46	10	0	43	1.37
79692--80057	181	2.0	183	92	2	612	51	12	7	28	1.68
82329--82469	69	2.0	70	95	2	257	24	21	12	41	1.87
83776--83846	25	2.9	25	95	2	126	29	38	0	32	1.58
90557--90602	22	2.1	22	84	4	58	19	8	0	71	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91175--91217	19	2.3	18	84	4	50	55	4	0	39	1.20
91300--91375	39	1.9	40	84	7	102	73	2	7	15	1.17
92717--92779	3	20.7	3	73	20	51	66	0	4	28	1.12
92712--92759	12	4.1	12	78	10	55	70	0	4	25	1.04
92805--92849	16	3.0	15	81	18	58	53	6	2	37	1.40
92805--92862	29	2.0	30	82	3	73	50	6	3	39	1.46
92834--93142	74	4.0	72	84	9	332	44	5	3	45	1.44
92909--93144	36	6.3	36	86	9	303	44	5	3	46	1.43
94497--94791	39	7.7	39	78	13	292	28	48	9	12	1.73
94626--94771	69	2.2	67	82	8	172	29	47	9	13	1.74
94497--94689	78	2.5	78	95	0	341	26	49	8	14	1.72
94661--94729	27	2.6	27	90	4	104	30	49	7	13	1.68
94691--94794	42	2.5	42	90	0	172	29	49	11	9	1.71
96555--96595	22	1.9	21	85	5	55	36	4	0	58	1.20
96586--96678	26	3.6	26	98	0	177	38	8	0	52	1.32
97495--97526	14	2.3	14	94	0	55	62	0	0	37	0.95
97558--97607	24	2.0	24	88	3	73	44	2	0	54	1.11
97568--97615	24	2.0	24	83	4	60	47	0	2	50	1.12
97656--97689	18	1.9	17	88	5	50	44	5	0	50	1.26
106408--106452	3	15.0	3	85	0	63	31	33	2	33	1.70
106409--106471	12	5.2	12	84	0	63	23	33	9	33	1.87
108484--108521	13	2.9	13	85	11	51	73	2	0	23	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108495--108601	29	3.7	29	86	10	116	66	3	0	29	1.09
108505--108596	19	4.8	19	70	19	57	67	3	0	29	1.06
108534--108600	10	7.1	10	72	17	63	67	2	0	29	1.06
109070--109105	2	18.5	2	94	5	65	52	0	0	47	1.00
111060--111086	12	2.2	12	100	0	54	55	0	7	37	1.28
111191--111226	3	12.0	3	100	0	72	66	0	0	33	0.92
111344--111387	16	2.9	15	77	16	54	79	2	0	18	0.83
113080--113485	84	4.8	83	75	9	315	24	18	23	33	1.97
113487--113627	67	2.1	68	85	5	187	35	12	19	31	1.90
113586--113882	36	8.4	36	72	11	168	40	13	18	27	1.88
113851--113894	21	2.0	22	91	4	72	43	11	15	29	1.82
115249--115432	95	1.9	94	87	3	271	32	16	17	33	1.93
118168--118200	15	2.1	16	88	5	50	75	3	12	9	1.14
119237--119283	24	2.0	23	83	4	58	74	0	8	17	1.05
130775--130834	31	1.9	31	96	0	111	31	21	18	28	1.97
130917--130965	23	2.2	22	82	10	55	32	12	4	51	1.58
130969--131016	19	2.5	20	89	3	71	31	12	6	50	1.65
142792--142830	16	2.4	17	91	8	71	35	17	10	35	1.84
149711--149775	27	2.4	27	97	2	123	36	27	4	30	1.77
156318--156368	2	25.5	2	100	0	102	49	0	0	50	1.00
157636--157673	17	2.2	17	86	9	51	23	0	13	63	1.30
170834--170866	17	1.9	17	88	11	50	78	0	0	21	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171146--171174	14	2.0	15	93	6	51	48	0	0	51	1.00
171296--171341	13	3.5	13	82	8	58	43	0	0	56	0.99
171253--171343	16	5.8	16	68	23	50	39	2	1	57	1.18
171400--171470	10	6.2	12	72	21	64	36	0	0	63	0.95
171276--171576	16	19.7	16	65	24	73	36	2	1	59	1.20
171557--171585	13	2.2	13	100	0	58	31	6	0	62	1.22
179902--179927	5	5.2	5	100	0	52	61	0	0	38	0.96
180101--180199	51	1.9	51	89	0	153	35	8	20	36	1.82
182970--183158	94	2.0	94	100	0	378	20	18	22	39	1.93
190770--190843	2	37.0	2	100	0	148	50	0	0	50	1.00
194630--194662	14	2.4	14	94	0	57	60	0	0	39	0.97
195330--195382	23	2.3	23	87	9	81	11	35	24	28	1.90
197024--197135	20	5.6	20	74	10	86	45	19	16	18	1.85
197025--197119	40	2.4	40	84	5	131	46	21	15	16	1.84
197124--197195	20	3.6	20	82	0	99	41	16	18	23	1.89
197105--197200	40	2.4	40	92	0	156	41	17	17	22	1.90
208389--208456	27	2.4	29	78	7	79	33	0	4	61	1.16
210715--210797	33	2.5	32	79	13	80	22	1	10	65	1.31
213741--213782	21	2.0	21	95	0	75	26	28	21	23	1.99
213895--213992	21	5.0	21	72	18	95	16	27	35	20	1.94
223226--223276	24	2.1	24	100	0	102	45	7	25	21	1.79
223232--223283	24	2.2	24	89	0	77	50	11	21	17	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
228959--229017	21	2.9	21	87	2	84	16	27	35	20	1.94
238590--238660	33	2.2	33	84	5	90	9	40	11	38	1.74
239393--239441	2	24.5	2	100	0	98	51	0	0	48	1.00
242189--242248	30	2.0	30	83	6	77	43	11	3	41	1.57
242561--242611	15	3.3	15	82	15	68	35	0	5	58	1.22
242827--242885	11	5.4	11	74	8	57	38	1	3	55	1.26
242860--242908	21	2.4	20	86	3	62	34	2	0	63	1.06
242868--242923	26	2.2	26	90	9	89	30	3	0	66	1.09
243809--243902	28	3.4	28	87	0	134	32	27	21	18	1.96
250576--250606	12	2.6	12	89	0	53	51	0	0	48	1.00
250590--250955	22	16.6	22	88	0	489	43	0	9	46	1.36
250980--251038	31	1.9	31	89	0	91	45	8	3	42	1.51
255600--255763	86	1.9	86	82	14	205	28	9	4	58	1.48
255600--255764	43	3.8	44	75	19	136	27	9	4	58	1.47
255784--256096	44	7.2	44	78	9	299	26	17	5	50	1.68
255784--256096	87	3.6	85	79	9	332	26	17	5	50	1.68
263488--263624	70	2.0	70	81	5	161	26	16	28	28	1.97
275776--275821	20	2.3	20	84	0	65	21	4	21	52	1.64
277172--277217	16	2.9	16	83	0	56	54	0	0	45	0.99
277288--277317	2	15.0	2	100	0	60	50	0	0	50	1.00
279732--279802	24	3.0	24	79	2	81	22	25	22	29	1.99
292544--292577	15	2.2	16	89	5	52	29	0	5	64	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302883--302918	7	5.1	7	93	0	63	55	0	0	44	0.99
302883--302925	21	2.0	21	95	0	77	51	0	0	48	1.00
308944--308984	15	2.6	16	84	3	57	36	7	7	48	1.59
310253--310363	58	1.9	56	83	7	143	61	1	2	34	1.21
310783--310852	34	2.1	34	91	0	113	32	14	10	42	1.78
312217--312571	175	2.0	180	97	2	675	30	22	21	25	1.99
312883--312911	6	4.8	6	100	0	58	0	17	51	31	1.45
315231--315357	36	3.6	35	74	13	102	75	6	4	13	1.15
315296--315357	15	4.1	15	78	10	63	80	8	0	11	0.90
315472--315570	36	2.7	35	77	12	101	75	6	7	11	1.17

Tables:   1   2