genome.fa.s8340.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008340.1 Hibiscus syriacus cultivar Beakdansim tig00111064_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  409852

Tables:   1   2   

This is table  2  of  2  ( 171 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316689--317061	84	4.5	84	79	6	425	24	20	24	30	1.99
316644--317061	84	5.1	80	79	7	320	24	20	24	29	1.99
316644--317061	165	2.5	164	87	3	561	24	20	24	29	1.99
320447--320491	19	2.4	19	92	3	74	66	8	13	11	1.44
322226--322352	36	3.9	32	73	19	104	74	6	4	14	1.17
322293--322352	15	4.0	15	80	6	68	80	8	0	11	0.92
323957--324311	33	11.0	32	68	18	109	46	8	4	40	1.55
323965--324022	27	2.2	27	84	3	73	50	8	1	39	1.43
323975--324180	91	2.3	89	80	9	220	46	8	4	40	1.55
324125--324400	35	7.8	34	76	16	199	45	6	5	43	1.51
324252--324277	12	2.2	12	100	0	52	42	7	7	42	1.62
324106--324415	37	8.8	36	76	18	214	45	6	5	42	1.53
324322--324362	16	2.5	17	76	11	50	41	4	2	51	1.36
328835--329175	172	2.0	172	94	1	603	44	16	15	23	1.86
335297--335351	23	2.5	21	81	16	67	25	25	25	23	2.00
335291--335371	20	3.8	20	75	12	63	20	22	30	25	1.98
344385--344463	36	2.2	36	97	0	149	29	17	20	32	1.95
346764--346826	25	2.5	25	97	0	117	22	0	30	47	1.51
351923--352048	59	2.1	59	80	4	137	34	15	4	46	1.67
353462--353511	21	2.3	21	93	3	82	36	26	24	14	1.93
353529--353585	23	2.5	23	88	5	80	36	22	21	19	1.95
354944--354972	4	7.2	4	100	0	58	0	24	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358518--358686	88	1.9	89	85	3	234	34	13	14	37	1.86
363777--363825	24	2.0	24	100	0	98	53	0	12	34	1.39
364458--364517	14	4.3	14	100	0	120	46	15	8	30	1.74
364866--364919	24	2.3	23	84	9	74	70	3	9	16	1.28
365693--365721	2	14.5	2	100	0	58	48	0	0	51	1.00
366269--366748	54	8.9	54	87	2	617	27	19	20	32	1.97
368446--368487	2	21.0	2	100	0	84	50	0	0	50	1.00
369305--369542	65	3.7	65	88	2	343	36	23	12	28	1.91
369305--369540	130	1.8	130	90	0	382	36	23	12	27	1.91
372538--372619	29	2.8	29	94	1	137	32	14	9	42	1.79
377299--377380	29	2.8	29	94	1	137	32	14	9	42	1.79
378986--379092	53	2.0	53	96	0	196	47	14	2	35	1.58
381566--381600	17	2.1	17	100	0	70	31	17	11	40	1.85
387764--387808	23	2.0	23	81	0	54	26	24	26	22	2.00
387923--387991	25	2.8	25	90	0	111	28	24	26	20	1.99
389643--389687	21	2.1	21	87	0	63	15	24	28	31	1.96
393096--393164	25	2.8	25	93	0	120	30	26	26	17	1.97
394830--394874	21	2.1	21	87	0	63	15	24	28	31	1.96
397109--397170	14	4.2	15	70	29	53	61	1	1	35	1.16
397792--397864	31	2.4	31	85	0	92	30	17	15	36	1.91
398469--398514	20	2.3	20	92	0	74	30	28	13	28	1.94
398928--399022	48	2.0	48	87	0	136	32	15	11	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398858--399086	107	2.1	105	90	4	287	36	13	9	41	1.76
399604--399751	73	2.0	72	93	1	251	39	16	22	20	1.91
405067--405130	31	2.1	31	87	0	92	39	4	7	48	1.53
408131--408160	13	2.2	14	94	5	53	36	0	20	43	1.52
409323--409365	19	2.3	18	85	14	61	55	9	18	16	1.67
409479--409524	20	2.3	19	78	10	56	56	8	17	17	1.65
409484--409522	21	1.9	20	85	15	53	56	10	15	17	1.66

Tables:   1   2

The End!