genome.fa.s8348.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008348.1 Hibiscus syriacus cultivar Beakdansim tig00111079_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57471

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2801--2840	20	2.0	20	95	0	71	45	12	5	37	1.64
2797--2947	53	2.9	53	96	2	270	49	13	5	31	1.66
2854--2893	20	2.0	21	90	5	64	45	15	5	35	1.68
2908--2946	20	2.0	20	89	0	60	43	17	5	33	1.72
3100--3354	126	2.0	128	87	6	374	30	22	7	39	1.82
6256--6370	57	2.0	57	94	0	203	28	27	8	34	1.87
16930--16955	2	13.0	2	100	0	52	50	0	0	50	1.00
20070--20108	6	6.5	6	87	0	51	33	35	12	17	1.88
22605--22691	3	29.0	3	80	0	102	57	0	1	41	1.06
22594--22691	24	4.0	24	89	1	142	56	0	1	42	1.06
22965--23151	92	2.1	90	84	7	236	31	17	15	36	1.91
23055--23655	113	5.3	112	93	2	927	28	19	14	38	1.90
24490--24816	84	3.9	84	97	0	600	35	21	14	28	1.93
33016--33047	15	2.1	15	94	0	55	46	9	18	25	1.79
36328--36410	28	3.0	28	75	13	75	65	1	6	27	1.24
38385--38467	3	28.0	3	78	7	89	60	0	1	38	1.05
39451--39507	23	2.5	23	80	8	71	38	8	19	33	1.82
41215--41240	10	2.6	10	100	0	52	23	0	0	76	0.78
43530--43560	15	2.1	15	93	0	53	16	12	38	32	1.86
44266--44373	28	3.7	29	72	12	78	61	10	11	17	1.56
45779--45842	3	21.0	3	75	20	53	62	0	0	37	0.95
45779--45842	19	3.2	20	81	14	78	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46113--46354	127	1.9	128	84	5	328	22	14	34	27	1.94
46439--46590	31	4.8	31	67	18	98	40	14	16	28	1.87
46377--46548	65	2.6	65	80	6	197	40	14	17	27	1.89
46695--46782	38	2.3	38	94	0	149	31	13	13	40	1.84
46814--46918	35	2.9	36	84	5	142	33	14	12	40	1.83
47714--47751	20	1.9	20	88	0	58	63	10	2	23	1.39
47909--48019	30	3.7	30	72	10	84	58	9	11	19	1.61
47797--48033	29	8.1	29	72	9	124	56	13	13	16	1.67
49486--49511	13	2.0	13	100	0	52	53	0	0	46	1.00
50125--50264	31	4.4	32	68	14	76	38	13	17	30	1.88
50086--50242	65	2.4	67	81	6	194	40	13	16	29	1.87
50271--50393	63	2.0	63	90	0	192	43	13	13	30	1.82
50373--50465	38	2.4	39	87	1	125	35	11	15	37	1.84
50500--50599	35	2.9	36	88	4	134	32	13	15	40	1.85
51853--51889	13	2.8	13	88	12	58	0	10	16	72	1.10
51879--51915	20	2.0	20	89	10	60	0	13	5	81	0.86
51889--51949	14	4.5	15	80	15	62	1	18	4	75	1.06
51885--51936	26	2.1	26	89	10	83	0	15	5	78	0.92
51889--51969	41	2.0	40	80	7	92	3	17	8	70	1.28
55509--55558	19	2.6	19	84	9	57	54	12	2	32	1.49
55624--55689	28	2.3	28	81	5	78	57	12	13	16	1.65

Tables:   1

The End!