genome.fa.s8349.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008349.1 Hibiscus syriacus cultivar Beakdansim tig00111081_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  333942

Tables:   1   2   

This is table  1  of  2  ( 203 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1719--1746	8	3.5	8	100	0	56	50	10	0	39	1.37
22448--22714	81	3.3	82	88	3	389	22	18	24	34	1.96
25600--25636	2	18.5	2	88	0	56	43	0	0	56	0.99
25599--25636	10	3.8	10	92	0	67	42	0	0	57	0.98
27241--27280	21	2.0	21	90	5	64	60	0	2	37	1.11
27274--27341	21	3.2	21	64	22	52	38	2	5	52	1.41
27290--27363	15	5.1	15	70	15	66	40	1	2	55	1.22
27273--27364	42	2.2	42	96	1	168	41	2	4	52	1.33
27652--27802	78	1.9	80	85	6	209	41	15	5	38	1.70
34690--34928	65	3.8	64	85	4	315	28	15	18	37	1.91
34696--34927	131	1.8	126	87	4	347	28	15	18	37	1.91
35513--35760	86	2.9	85	83	2	291	27	19	18	33	1.96
38437--38486	4	12.5	4	76	16	50	74	2	0	24	0.93
38437--38480	11	3.8	11	80	11	52	72	2	0	25	0.96
38437--38486	22	2.3	21	83	13	57	74	2	0	24	0.93
40432--40667	127	1.9	127	81	9	293	44	8	6	41	1.59
42120--42188	3	22.3	3	79	5	75	59	0	1	39	1.06
42341--42427	45	2.0	43	84	4	111	29	19	24	26	1.98
42441--42590	45	3.3	45	86	3	203	28	21	24	26	1.99
42488--42710	120	1.9	118	85	3	313	31	19	22	26	1.98
42616--43503	45	19.8	45	88	4	1161	33	19	22	25	1.97
42606--43503	135	6.7	135	88	1	1293	33	19	22	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44154--44206	22	2.5	20	87	6	70	39	11	11	37	1.77
44154--44208	20	2.6	22	88	5	78	40	10	10	38	1.76
44576--44727	54	2.8	54	78	5	157	23	20	17	38	1.93
48432--48456	9	2.8	9	100	0	50	0	16	0	84	0.63
51238--51291	25	2.1	27	82	6	67	61	11	11	16	1.57
53534--53600	31	2.3	27	82	14	80	65	0	4	29	1.12
53542--53599	28	2.1	28	84	12	75	62	0	5	32	1.18
54275--54507	127	1.9	127	81	7	287	43	7	7	41	1.60
55970--56041	3	23.3	3	74	5	63	62	0	1	36	1.04
63402--63461	3	20.3	3	93	3	104	35	0	0	65	0.93
65319--65368	26	2.0	26	88	4	75	42	10	10	38	1.72
65489--65534	21	2.2	21	88	0	65	54	2	2	41	1.25
65569--65659	31	2.8	32	68	22	82	37	3	1	58	1.22
67826--68183	194	1.8	193	80	1	430	37	12	12	38	1.80
70307--70363	23	2.5	23	88	0	78	31	24	24	19	1.98
71912--71969	20	2.7	20	86	10	71	27	22	18	31	1.97
71957--72118	64	2.5	64	84	7	197	26	24	16	32	1.96
76692--76721	15	2.0	15	93	0	51	83	0	16	0	0.65
77893--78046	54	2.9	54	91	0	254	37	13	20	28	1.91
79091--79507	177	2.4	177	92	0	701	32	18	20	29	1.96
79826--79869	3	15.3	3	86	9	65	36	0	0	63	0.95
79826--79880	17	3.2	17	87	12	85	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79830--79880	11	4.5	11	82	7	57	35	0	0	64	0.94
79827--79868	14	3.0	14	89	0	66	33	0	0	66	0.92
83509--83732	117	1.9	116	83	7	292	28	14	9	47	1.75
87179--87248	21	3.2	21	76	11	77	31	22	21	24	1.98
87179--87274	45	2.2	44	86	5	131	29	25	20	25	1.99
89900--90024	65	1.9	65	90	6	200	28	22	18	30	1.97
90793--90830	18	2.1	19	95	5	69	28	0	0	71	0.87
91950--91974	13	1.9	13	100	0	50	16	24	20	40	1.91
94918--94977	2	30.5	2	93	3	104	51	0	0	48	1.00
96299--96395	36	2.7	37	84	12	130	30	14	18	36	1.91
96494--96681	36	5.4	36	68	14	133	39	12	19	28	1.88
96595--96681	37	2.4	36	86	1	111	41	13	19	25	1.88
96395--96757	101	3.6	101	92	1	582	36	13	19	31	1.90
96772--97128	72	5.0	72	88	0	498	39	13	18	28	1.89
96708--97130	36	11.7	36	65	9	135	38	14	18	28	1.90
98040--98221	95	1.9	95	93	0	310	30	18	17	33	1.94
101141--101172	15	2.0	17	88	11	50	68	3	15	12	1.32
102554--102605	2	27.5	2	79	11	56	51	1	1	44	1.23
102572--102612	19	2.2	18	86	8	55	60	2	0	36	1.10
102570--102613	21	2.0	22	86	4	63	61	2	0	36	1.09
108071--108121	17	2.9	17	75	16	50	13	0	9	76	1.02
108243--108274	15	2.0	17	88	11	50	46	6	15	31	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114512--114542	15	2.1	15	93	0	53	54	0	0	45	0.99
118415--118445	14	2.3	14	94	5	55	6	29	0	64	1.18
118934--118993	30	2.0	30	96	0	111	30	15	3	51	1.59
121497--121568	29	2.4	30	86	4	101	36	12	12	38	1.81
122008--122032	13	1.9	13	100	0	50	36	0	0	64	0.94
136763--136845	3	26.3	3	72	13	60	38	2	2	56	1.25
136757--136845	22	3.9	22	77	10	79	38	3	3	55	1.33
136769--136808	16	2.5	16	91	0	62	35	2	5	57	1.34
137218--137276	30	2.0	31	83	6	77	49	27	3	20	1.65
146782--146863	43	1.9	44	85	5	114	25	14	23	36	1.93
146789--146886	42	2.3	42	78	3	99	25	19	24	30	1.98
146399--147527	257	4.5	255	81	7	1273	32	15	17	34	1.91
146518--147512	495	2.0	494	84	2	1320	32	15	17	34	1.92
147640--147712	22	3.2	22	77	11	67	39	4	2	53	1.34
147671--147700	14	2.1	14	93	0	51	46	0	0	53	1.00
151918--152002	31	2.9	30	80	7	102	32	3	2	61	1.26
152051--152116	29	2.2	30	83	2	80	37	7	1	53	1.39
152109--152145	2	18.5	2	100	0	74	51	0	0	48	1.00
151978--152120	75	1.9	74	87	7	200	36	9	2	52	1.45
152176--152294	30	4.0	30	75	17	97	55	1	6	36	1.36
152189--152261	29	2.5	30	84	6	96	54	2	4	38	1.34
152616--152674	23	2.6	23	80	0	64	40	10	18	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152483--152966	155	3.1	155	88	3	704	42	12	12	32	1.80
152780--152828	23	2.1	23	88	0	71	38	10	20	30	1.86
153035--153207	75	2.4	72	89	6	260	38	16	10	34	1.84
153363--153648	92	3.1	92	93	1	464	45	11	13	28	1.79
153543--153894	114	3.1	114	91	0	555	43	12	12	31	1.80
153863--153914	20	2.6	20	96	0	95	42	19	9	28	1.82
153751--154031	134	2.1	132	89	1	418	42	13	12	30	1.82
153637--154138	246	2.0	246	92	0	835	42	13	12	31	1.81
154052--154090	21	1.9	20	94	5	69	43	10	10	35	1.73
153883--154171	112	2.6	114	88	1	429	42	13	14	30	1.83
155149--155199	21	2.4	21	84	12	61	37	13	0	49	1.43
156270--156315	23	2.0	23	83	12	58	39	2	0	58	1.10
156648--157002	177	2.0	178	96	1	660	29	20	24	25	1.99
164189--164231	21	2.0	22	82	13	54	34	0	16	48	1.46
164798--164842	21	2.1	21	87	0	63	31	28	24	15	1.96
166300--166378	32	2.5	31	76	15	90	26	17	17	37	1.92
166364--166391	13	2.2	13	100	0	56	25	14	7	53	1.66
166426--166498	30	2.4	30	97	0	137	24	19	24	31	1.98
167702--168086	182	2.1	184	92	3	638	42	2	8	45	1.49
168179--168253	27	2.6	29	85	8	91	33	21	17	28	1.96
168625--168884	125	2.1	125	93	0	439	29	16	15	38	1.89
169155--169194	20	2.0	20	100	0	80	50	5	10	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169235--169758	200	2.6	200	84	4	643	40	14	14	30	1.86
169744--169800	23	2.4	23	73	2	60	36	15	10	36	1.82
169753--169915	87	1.9	87	97	0	308	31	14	12	41	1.83
169837--169881	23	2.0	23	90	0	72	37	17	8	35	1.81
176465--176493	7	4.3	7	91	8	51	27	0	0	72	0.85
183940--184173	41	5.7	39	69	11	139	34	19	15	30	1.93
186096--186208	42	2.7	42	90	0	163	17	10	15	55	1.68
186525--186562	18	2.1	18	85	9	51	44	0	0	55	0.99
186531--186582	25	2.0	26	85	10	72	46	0	1	51	1.12
186576--186639	23	2.7	23	87	4	83	51	4	1	42	1.32

Tables:   1   2