genome.fa.s8349.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008349.1 Hibiscus syriacus cultivar Beakdansim tig00111081_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  333942

Tables:   1   2   

This is table  2  of  2  ( 203 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186918--186956	20	2.0	20	84	0	51	33	17	7	41	1.79
186930--187002	30	2.5	30	93	2	130	31	19	6	42	1.77
186930--187002	15	4.9	15	79	3	94	31	19	6	42	1.77
192362--192408	21	2.2	21	85	7	60	19	10	4	65	1.39
192362--192407	22	2.1	21	84	11	58	17	10	4	67	1.37
192562--192618	21	2.8	20	71	12	53	21	7	5	66	1.36
192350--192739	209	1.9	211	79	8	454	44	6	6	42	1.55
193120--193159	17	2.4	17	95	0	71	12	47	25	15	1.80
198018--198224	104	2.0	104	92	0	342	39	21	2	36	1.67
204428--204641	47	4.6	47	82	2	241	18	23	22	34	1.96
206133--206180	11	4.4	11	81	0	60	58	25	4	12	1.52
206133--206197	33	2.0	33	84	6	87	56	23	7	12	1.61
206188--206247	23	2.6	23	75	0	66	46	20	8	25	1.78
206237--206319	30	2.6	30	83	9	85	55	15	8	20	1.66
207105--207129	4	6.2	4	100	0	50	24	0	0	76	0.80
207673--207739	22	3.0	22	80	4	80	52	10	19	17	1.73
208942--208986	23	2.0	22	83	12	56	48	0	2	48	1.13
211979--212008	15	2.0	15	93	0	51	40	3	6	50	1.45
212011--212763	286	2.6	285	84	4	956	48	7	12	31	1.70
212825--212881	28	2.1	27	86	3	78	28	0	21	50	1.48
212991--213959	4	243.5	4	88	4	1318	45	24	4	25	1.73
213972--214644	8	84.2	8	90	0	763	40	50	8	0	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215972--216026	25	2.2	25	80	6	67	41	1	1	54	1.21
217589--217899	139	2.2	139	84	4	396	41	14	14	30	1.85
220502--221265	203	3.8	203	88	2	1085	27	19	19	34	1.96
226546--226596	18	2.8	18	96	0	93	23	19	25	31	1.98
229122--229168	21	2.2	21	92	0	76	61	8	19	10	1.53
230572--230622	17	2.9	17	75	25	52	60	1	0	37	1.08
232390--232459	6	11.3	6	80	6	68	18	2	4	74	1.11
242825--242859	16	2.3	15	90	5	52	88	2	8	0	0.61
242791--242925	72	1.9	71	83	7	175	57	11	20	11	1.64
244045--244226	100	1.8	100	89	0	283	37	24	17	20	1.94
247673--247723	13	3.6	14	75	15	52	58	0	1	39	1.09
247673--247738	28	2.4	29	80	19	79	57	1	1	39	1.17
248786--248881	30	3.2	30	92	0	165	30	18	17	33	1.95
250498--250644	55	2.6	55	89	2	222	30	21	14	34	1.93
258163--258438	136	2.0	138	91	2	450	27	19	16	36	1.93
261899--262300	55	7.3	55	90	1	608	31	18	14	36	1.90
264200--264269	30	2.3	30	90	0	104	32	5	32	28	1.81
266834--267213	55	6.9	54	88	5	432	31	25	15	27	1.96
266836--267213	110	3.5	110	87	5	507	31	24	15	27	1.96
266836--267213	163	2.3	164	86	5	514	31	24	15	27	1.96
267215--267322	37	2.9	37	83	2	119	23	18	17	40	1.91
268601--268734	15	8.9	15	69	24	70	9	16	0	73	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
268602--268669	8	9.0	7	77	16	57	4	17	1	76	1.03
268591--268713	24	4.9	25	73	16	94	7	17	0	73	1.10
268682--268736	20	2.8	19	81	10	65	10	12	0	76	1.02
280232--280270	17	2.3	17	81	0	51	56	15	12	15	1.68
283190--283269	10	7.5	10	70	18	54	33	3	22	40	1.72
283196--283271	23	3.5	22	78	7	75	35	3	22	38	1.73
288134--288171	12	3.2	12	85	3	51	63	0	2	34	1.09
288207--288263	29	1.9	30	82	10	73	59	3	7	29	1.40
289046--289104	22	2.5	24	78	13	77	0	30	25	44	1.55
289059--289105	22	2.1	22	96	0	85	0	34	23	42	1.54
289595--289664	3	23.0	3	83	11	81	64	0	0	35	0.94
289595--289664	22	3.3	20	88	8	77	64	0	0	35	0.94
289595--289664	30	2.4	28	90	4	104	64	0	0	35	0.94
289944--290780	74	11.4	74	93	1	1434	32	20	18	27	1.97
289944--290780	147	5.7	147	94	1	1460	32	20	18	27	1.97
289944--290780	221	3.8	221	93	2	1439	32	20	18	27	1.97
295735--295779	21	2.2	20	88	11	65	0	13	2	84	0.72
295737--295778	12	3.3	13	84	15	61	0	14	2	83	0.75
298247--298278	15	2.0	17	88	11	50	56	12	12	18	1.67
300226--300254	5	5.8	5	100	0	58	79	0	20	0	0.74
303667--304021	59	6.1	59	89	2	511	33	14	21	30	1.93
304431--304572	55	2.5	55	78	11	153	33	15	19	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304911--305515	68	9.0	68	92	1	1004	29	16	25	29	1.96
305539--305676	45	3.0	45	86	1	186	47	7	20	24	1.75
306768--306816	19	2.5	20	83	12	66	48	8	0	42	1.32
307005--307060	27	2.1	27	89	0	85	35	21	35	7	1.81
310575--310608	17	1.9	18	88	5	52	2	17	38	41	1.65
310743--310770	2	14.0	2	100	0	56	50	0	0	50	1.00
315860--315897	14	2.7	14	84	11	51	21	10	28	39	1.86
318215--318361	36	4.0	36	77	10	138	29	17	12	40	1.85
318621--318655	16	2.2	16	100	0	70	37	11	11	40	1.77
318663--318888	36	6.7	35	73	12	168	26	19	14	40	1.89
318666--318853	65	2.9	65	83	2	225	27	19	13	39	1.89
318912--319367	134	3.4	133	84	1	592	28	33	16	22	1.95
324653--324686	17	2.0	17	88	11	52	47	17	14	20	1.83
326169--326211	2	21.5	2	100	0	86	51	0	0	48	1.00
326989--327015	12	2.2	12	100	0	54	59	0	0	40	0.98
330439--330814	55	6.9	55	84	4	478	27	26	14	31	1.95
330449--330814	160	2.2	165	86	8	525	28	25	15	30	1.96

Tables:   1   2

The End!