genome.fa.s8351.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008351.1 Hibiscus syriacus cultivar Beakdansim tig00111085_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  440059

Tables:   1   2   

This is table  1  of  2  ( 225 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3239--3326	45	2.0	45	100	0	176	46	18	6	28	1.74
4385--4423	16	2.4	16	95	0	69	41	25	12	20	1.88
5426--5470	19	2.3	19	88	11	65	35	20	4	40	1.72
8082--8154	36	1.9	39	83	8	98	45	4	2	47	1.36
14337--14398	2	34.5	2	76	20	57	45	0	0	54	0.99
14337--14428	16	5.7	17	71	17	72	42	0	0	57	0.98
14341--14425	25	3.3	25	73	17	66	41	0	0	58	0.98
14351--14436	34	2.5	34	98	0	163	40	0	0	59	0.97
14355--14436	23	3.6	24	70	18	68	40	0	0	59	0.97
14425--14476	25	2.0	27	92	7	90	21	3	30	44	1.70
15816--15846	6	5.3	6	96	3	55	29	0	0	70	0.87
16995--17067	31	2.4	31	79	9	85	41	10	12	35	1.78
17326--17427	15	6.5	15	80	15	109	45	0	1	52	1.12
17326--17385	30	2.0	30	100	0	120	50	0	0	50	1.00
17393--17427	14	2.5	14	100	0	70	40	0	0	60	0.97
17430--17472	22	2.0	22	100	0	86	34	0	13	51	1.42
17407--17558	32	5.4	32	70	28	155	36	0	11	52	1.37
17326--17482	68	2.3	66	85	6	208	42	0	5	52	1.25
17407--18003	54	11.1	54	78	13	619	33	0	13	52	1.42
17484--17526	22	2.0	22	100	0	86	34	0	13	51	1.42
17506--17895	80	4.9	80	97	0	719	32	0	14	52	1.44
17583--17634	18	3.1	18	71	21	58	28	0	13	57	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17689--17736	22	2.4	18	73	23	51	33	0	14	52	1.42
17666--18098	134	3.2	134	81	11	605	33	0	13	52	1.42
17831--17986	32	5.5	30	71	27	137	33	0	12	53	1.43
17858--17900	22	2.0	22	95	0	77	34	2	11	51	1.51
17912--17954	22	2.0	22	100	0	86	34	0	13	51	1.42
17934--18083	80	1.9	80	94	0	264	32	0	14	53	1.42
22664--22738	18	4.4	18	77	16	97	18	49	18	13	1.79
22668--22738	31	2.3	31	87	0	115	18	47	19	14	1.82
22717--22760	12	3.3	13	84	12	54	15	40	25	18	1.90
22735--22768	7	4.7	7	85	7	50	17	32	26	23	1.97
22737--22767	15	2.1	15	93	0	53	16	35	22	25	1.94
24054--24088	18	1.9	18	88	0	52	54	0	17	28	1.43
27864--27938	18	4.4	18	77	16	97	18	49	18	13	1.79
27868--27938	31	2.3	31	87	0	115	18	47	19	14	1.82
27917--27960	12	3.3	13	84	12	54	15	40	25	18	1.90
27935--27968	7	4.7	7	85	7	50	17	32	26	23	1.97
27937--27967	15	2.1	15	93	0	53	16	35	22	25	1.94
29257--29291	18	1.9	18	88	0	52	54	0	17	28	1.43
34606--34657	2	26.0	2	100	0	104	50	0	0	50	1.00
34725--34824	20	5.0	20	81	4	121	28	17	28	27	1.97
34734--34854	60	2.0	60	86	0	170	28	14	26	29	1.95
35039--35073	18	2.0	18	88	5	54	48	20	0	31	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57229--57287	28	2.1	28	93	0	100	44	16	3	35	1.65
57373--57424	3	17.3	3	95	0	95	0	30	0	69	0.89
59235--59351	60	2.0	60	80	0	135	32	19	5	41	1.76
60821--60902	29	2.8	29	94	1	137	32	14	9	42	1.79
65585--65666	29	2.8	29	94	1	137	32	14	9	42	1.79
69299--69338	21	1.9	21	89	0	62	30	5	25	40	1.77
69823--69848	13	2.0	13	100	0	52	46	0	15	38	1.46
85162--85224	32	2.0	32	100	0	126	30	25	19	25	1.98
85981--86012	15	2.1	15	94	0	55	46	9	6	37	1.61
97561--97616	3	18.0	3	82	10	51	41	0	0	58	0.98
97925--97977	22	2.4	22	100	0	106	26	24	24	24	2.00
99943--99997	22	2.5	21	73	26	60	27	5	0	67	1.12
102382--102421	13	3.1	13	89	7	55	15	15	15	55	1.71
104754--104892	8	16.6	8	68	22	56	76	0	23	0	0.78
104762--104890	7	18.7	7	94	3	199	75	0	24	0	0.80
104754--104891	41	3.3	41	90	3	213	76	0	23	0	0.78
109220--109269	19	2.5	19	83	9	64	36	12	14	38	1.83
109942--110353	45	9.1	45	92	1	662	22	22	19	35	1.96
109942--110353	46	9.1	45	92	2	628	22	22	19	35	1.96
109942--110353	91	4.5	91	93	1	700	22	22	19	35	1.96
110647--110689	15	2.8	16	79	10	54	53	0	0	46	1.00
110656--110707	24	2.1	25	86	10	72	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110663--110719	14	3.9	14	76	15	53	45	0	0	54	0.99
113421--113471	24	2.1	25	96	3	95	25	3	15	54	1.58
122929--123051	59	2.1	60	84	4	160	34	19	4	41	1.70
122929--123090	59	2.7	59	82	7	159	34	20	4	40	1.73
123821--123858	15	2.5	16	79	12	53	47	0	0	52	1.00
123810--123860	17	3.1	17	73	21	54	49	0	0	50	1.00
131130--131170	21	2.0	21	85	4	57	17	9	34	39	1.82
140100--140184	38	2.2	38	91	0	134	25	22	28	23	1.99
142165--142191	2	13.5	2	100	0	54	51	0	0	48	1.00
146381--146465	38	2.2	38	91	0	134	25	22	28	23	1.99
149553--149615	34	1.9	33	84	12	85	52	0	26	20	1.47
154290--154325	15	2.4	15	95	0	63	8	69	16	5	1.33
154279--154306	11	2.5	11	100	0	56	7	67	17	7	1.37
158008--158062	29	2.0	28	89	7	85	34	1	5	58	1.32
163671--163727	19	3.4	17	82	17	66	26	28	8	36	1.86
165543--165615	16	4.7	16	89	3	105	58	17	10	12	1.61
165551--165615	32	2.0	32	96	0	121	56	20	12	10	1.65
166706--166777	10	6.4	10	75	22	63	54	23	12	9	1.67
166713--166778	14	5.3	13	73	26	63	53	24	13	9	1.69
166727--166801	34	2.2	34	83	9	91	52	22	13	12	1.73
166706--166778	24	3.0	24	95	0	137	53	23	13	9	1.69
166693--166803	48	2.3	48	84	3	143	53	20	13	12	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167028--167100	36	2.0	36	94	0	128	45	10	2	41	1.54
171804--171855	3	16.3	3	84	15	61	32	0	0	67	0.91
171807--171863	9	6.8	8	81	18	55	31	0	1	66	1.02
178410--178445	12	2.9	12	87	4	54	72	11	11	5	1.28
179996--180229	105	2.3	102	82	10	273	31	19	12	36	1.89
180180--180264	36	2.4	36	82	4	100	30	21	12	35	1.91
180537--180728	28	6.8	28	87	7	257	31	10	14	43	1.79
180536--180728	55	3.4	55	85	7	255	31	10	13	43	1.79
180682--180746	28	2.3	28	81	2	76	33	7	13	44	1.73
180841--180996	65	2.4	65	87	9	221	32	13	12	42	1.81
180991--181023	13	2.5	13	95	0	57	90	9	0	0	0.44
180991--181023	14	2.4	14	94	0	57	90	9	0	0	0.44
181496--181557	30	2.1	28	82	5	70	33	17	14	33	1.90
181734--182178	40	10.4	40	70	17	236	24	29	19	26	1.99
181766--182091	43	7.6	43	73	11	256	25	30	19	24	1.98
181737--182178	130	3.4	129	91	2	688	25	29	19	26	1.99
182380--182431	3	16.3	3	84	15	61	32	0	0	67	0.91
182379--182429	10	5.2	10	86	13	79	31	0	0	68	0.90
187849--187886	6	6.3	6	96	0	67	34	18	28	18	1.95
191649--191680	15	2.3	15	89	10	50	81	3	6	9	0.97
216634--216691	28	2.1	28	96	0	107	24	5	20	50	1.69
220751--220786	15	2.4	15	100	0	72	30	11	30	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226391--226570	89	2.0	89	94	0	315	27	22	5	44	1.75
231579--231625	24	2.1	23	84	11	62	53	4	2	40	1.32
236214--236255	21	2.0	22	85	4	59	61	0	0	38	0.96
238304--238763	226	2.0	226	94	0	796	25	12	18	43	1.85
243515--243866	173	2.0	176	89	4	539	33	14	13	38	1.85
264176--264241	33	2.0	32	85	8	89	63	1	12	22	1.36
264440--264469	13	2.2	14	94	5	53	76	3	0	20	0.92
264440--264472	14	2.4	14	90	10	50	75	3	0	21	0.93
265667--265705	10	4.0	10	86	3	53	69	2	10	17	1.28
265800--265870	33	2.2	32	82	5	79	43	5	7	43	1.55

Tables:   1   2