genome.fa.s8351.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008351.1 Hibiscus syriacus cultivar Beakdansim tig00111085_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  440059

Tables:   1   2   

This is table  2  of  2  ( 225 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265783--266009	39	6.1	38	71	18	131	42	7	5	44	1.56
266717--267186	84	5.7	82	85	3	588	23	21	26	28	1.99
266715--267186	168	2.9	164	85	3	660	23	21	26	28	1.99
270525--270569	19	2.4	19	92	3	74	66	8	13	11	1.44
272262--272328	33	2.0	33	85	5	91	64	1	11	22	1.35
272528--272557	13	2.2	14	94	5	53	76	3	0	20	0.92
272528--272560	14	2.4	14	90	10	50	75	3	0	21	0.93
273756--273798	10	4.4	10	85	2	61	69	2	9	18	1.26
273756--273796	15	2.7	15	80	0	55	70	2	9	17	1.25
273893--273963	33	2.2	32	82	5	79	43	5	7	43	1.55
273876--274113	39	6.5	37	72	19	151	43	7	4	43	1.54
273876--274079	32	5.7	35	72	19	136	42	7	4	45	1.53
273990--274074	35	2.5	32	81	11	91	44	8	2	44	1.46
275264--275306	19	2.3	19	87	0	59	23	25	37	13	1.92
275752--275788	20	1.9	19	89	10	58	45	10	24	18	1.81
277404--277445	15	2.7	15	85	14	59	59	7	0	33	1.25
278786--278839	21	2.6	22	83	16	71	42	0	1	55	1.10
280660--280693	16	2.0	18	88	11	54	26	2	5	64	1.30
281163--281419	127	2.0	125	91	3	417	36	12	14	35	1.85
281804--281879	35	2.2	35	92	0	125	35	1	23	39	1.63
292068--292137	12	5.8	12	73	6	52	50	18	12	18	1.78
292066--292160	24	4.0	24	80	2	102	49	16	12	21	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292067--292172	24	4.4	24	72	11	92	48	16	14	20	1.81
292064--292157	48	2.0	48	87	4	136	50	15	12	21	1.78
294649--294677	13	2.2	13	100	0	58	13	24	44	17	1.85
294654--294694	18	2.3	18	86	0	55	9	21	48	19	1.77
313322--313366	20	2.2	20	84	11	56	37	11	11	40	1.76
326053--326108	21	2.7	22	78	10	64	12	21	41	25	1.88
327579--327604	12	2.2	12	100	0	52	7	0	46	46	1.31
333646--333698	21	2.5	21	96	0	97	28	18	26	26	1.98
335779--335864	45	2.0	43	88	6	129	23	29	26	20	1.99
338500--338608	41	2.7	41	95	0	200	32	15	16	35	1.90
342160--342199	19	2.1	19	90	0	62	55	0	0	45	0.99
348688--348749	28	2.2	28	83	16	76	46	6	0	46	1.28
349793--349836	23	1.9	23	81	9	54	47	0	0	52	1.00
356687--356768	15	5.5	15	77	17	82	42	1	3	52	1.26
356748--357119	32	12.4	32	69	25	208	34	0	12	52	1.38
356748--356916	54	3.1	54	98	0	320	35	0	11	53	1.37
356825--356867	22	2.0	22	100	0	86	34	0	13	51	1.42
356798--357136	134	2.5	137	91	4	544	34	0	12	52	1.39
356847--356996	80	1.9	80	94	2	266	33	0	14	52	1.41
356748--357087	188	1.8	188	96	0	635	35	0	12	52	1.39
356927--357231	54	5.6	54	80	9	359	35	0	12	52	1.39
356797--357231	220	2.0	220	89	3	671	34	0	12	52	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357058--357115	18	3.4	18	70	18	61	29	0	13	56	1.38
356765--357167	188	2.1	185	86	7	555	34	0	13	52	1.40
357179--357221	22	2.0	22	95	0	77	37	0	11	51	1.39
357246--357304	31	1.9	31	89	0	91	44	10	5	40	1.60
359919--360229	163	1.9	160	90	1	487	23	24	16	35	1.95
363921--364094	91	1.9	91	100	0	348	32	18	17	31	1.94
368134--368199	32	2.0	32	82	11	80	54	0	0	45	0.99
369288--369331	21	2.1	21	86	0	61	59	0	13	27	1.35
381478--381510	15	2.1	16	88	5	50	9	24	15	51	1.72
382260--382291	16	1.9	17	93	6	57	34	21	6	37	1.79
383324--383349	12	2.2	12	100	0	52	34	26	30	7	1.85
384488--384518	14	2.2	14	94	0	53	38	0	0	61	0.96
385783--385811	2	14.5	2	100	0	58	48	0	0	51	1.00
386441--386469	2	15.0	2	92	7	51	48	0	0	51	1.00
390862--390893	2	16.0	2	93	0	55	50	3	46	0	1.17
397412--397471	31	1.9	31	89	3	93	40	6	6	46	1.56
399982--400130	72	2.1	72	92	0	244	35	13	18	32	1.90
405522--405614	21	4.5	21	78	4	100	39	18	24	17	1.91
405603--405717	20	5.7	20	80	6	106	32	26	17	24	1.97
405522--405614	41	2.3	41	100	0	186	39	18	24	17	1.91
405600--405731	41	3.2	41	76	6	142	35	25	15	23	1.94
405905--405948	22	2.0	22	95	0	79	20	45	15	18	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
406213--406250	20	1.9	20	88	0	58	13	15	21	50	1.78
406386--406440	25	2.2	24	78	15	58	20	9	18	52	1.71
407568--407611	17	2.5	18	85	3	63	27	43	15	13	1.85
408093--408159	20	3.4	20	81	2	73	38	23	22	14	1.92
408148--408205	14	3.9	14	79	16	71	48	25	17	8	1.75
408132--408222	32	2.8	33	94	3	166	47	23	18	10	1.80
408093--408227	19	7.6	19	71	19	85	42	23	20	12	1.86
408239--408296	14	3.9	14	79	16	71	8	17	25	48	1.75
408234--408312	32	2.4	33	95	2	142	10	18	24	46	1.80
408297--408352	20	2.8	19	86	7	76	16	25	23	35	1.94
410215--410267	14	3.9	13	76	9	52	33	0	18	47	1.49
410337--410446	20	5.9	19	75	12	68	42	20	22	14	1.88
410341--410491	33	4.4	33	76	11	140	44	19	21	14	1.86
410370--410472	20	5.6	19	76	13	108	46	17	21	14	1.83
410341--410481	73	1.9	72	94	1	246	45	19	21	14	1.85
410510--410547	20	1.9	20	94	0	67	15	21	23	39	1.92
411583--411636	24	2.2	24	90	0	81	24	16	20	38	1.92
411811--411835	12	2.1	12	100	0	50	72	0	28	0	0.86
414127--414257	19	7.7	19	62	23	76	44	19	21	14	1.86
414127--414253	33	3.8	33	85	4	184	44	19	21	14	1.87
414128--414260	66	2.0	66	97	0	248	42	19	21	16	1.89
414262--414315	20	2.8	19	88	5	81	12	18	20	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414262--414315	19	2.8	20	91	5	85	12	18	20	48	1.81
414422--414458	14	2.6	14	91	0	65	45	24	0	29	1.53
415815--415881	21	3.2	21	68	4	55	19	20	35	23	1.95
415815--415937	42	2.9	41	79	7	113	22	18	36	21	1.95
417042--417084	21	2.0	22	82	13	54	48	2	4	44	1.36
417963--418046	33	2.5	34	86	7	118	38	27	22	11	1.89
417936--418119	19	10.1	19	75	15	165	44	22	21	11	1.84
418115--418159	19	2.4	19	88	0	72	6	15	24	53	1.66
418711--418804	20	4.7	20	75	7	73	25	18	23	32	1.97
418731--418825	41	2.3	41	80	3	102	22	20	21	36	1.95
418875--418915	21	2.0	21	85	0	55	34	31	17	17	1.93
420311--420350	14	2.9	14	82	14	55	62	0	2	35	1.09
421093--422105	259	3.9	261	83	4	1235	41	11	29	17	1.85
421091--422030	514	1.8	519	84	5	1319	40	11	29	17	1.85
422194--422266	36	2.0	36	94	0	128	32	23	20	23	1.98
423155--423234	41	2.0	41	94	0	142	18	17	13	50	1.79
439867--439930	32	2.0	32	96	0	119	9	31	51	7	1.62

Tables:   1   2

The End!