genome.fa.s8361.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008361.1 Hibiscus syriacus cultivar Beakdansim tig00111100_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1124086

Tables:   1   2   3   4   

This is table  4  of  4  ( 454 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
828549--828752	19	11.1	19	78	13	176	45	22	21	11	1.84
828748--828792	19	2.4	19	88	0	63	8	13	26	51	1.70
829409--829501	20	4.5	21	75	4	91	18	24	17	39	1.91
829395--829504	41	2.7	41	90	4	132	20	21	18	39	1.93
830034--830066	2	16.5	2	100	0	66	51	0	0	48	1.00
830160--830201	23	1.9	23	85	9	61	42	2	0	54	1.13
835815--835900	43	2.0	43	90	0	136	29	15	11	44	1.81
842312--842363	21	2.8	17	76	20	59	44	5	1	48	1.38
842988--843087	53	1.9	51	91	4	164	48	14	13	25	1.79
845837--845879	17	2.5	17	84	0	59	58	0	0	41	0.98
855856--855895	17	2.4	17	87	8	55	62	2	2	32	1.22
855873--855968	35	2.7	36	86	4	140	54	3	3	39	1.32
861632--861718	27	3.3	27	68	20	83	48	26	2	22	1.63
861627--861733	53	2.0	53	98	0	205	48	26	2	22	1.64
862335--862395	25	2.5	26	76	15	67	34	1	4	59	1.29
863852--863916	24	2.5	26	78	14	71	72	3	6	18	1.19
863857--863910	25	2.2	25	86	3	74	72	3	5	18	1.20
865655--867230	105	15.1	105	89	4	2237	23	18	25	33	1.97
866143--866298	43	3.4	43	68	14	134	21	18	26	33	1.96
871011--871073	25	2.5	26	84	7	76	73	3	4	19	1.15
882908--882954	23	2.0	23	100	0	94	57	12	4	25	1.54
889922--889955	14	2.4	14	90	9	52	55	2	8	32	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
891376--891428	26	2.1	25	82	3	61	56	1	1	39	1.21
897660--897702	18	2.4	18	85	11	54	23	2	2	72	1.08
901490--901545	22	2.5	22	94	0	94	7	23	17	51	1.70
907558--908141	267	2.2	263	78	12	623	40	19	11	28	1.87
908284--908360	36	2.1	36	95	0	136	28	14	40	16	1.88
908376--908419	12	3.6	12	78	3	52	22	40	18	18	1.91
909112--909162	15	3.5	15	78	5	59	45	3	15	35	1.65
909091--909169	30	2.6	31	76	11	85	49	3	12	34	1.59
909174--909200	14	1.9	14	100	0	54	33	14	14	37	1.88
909537--909605	30	2.3	29	85	11	88	55	1	0	43	1.08
909527--909579	19	2.7	20	75	16	56	54	1	0	43	1.11
909609--909665	23	2.4	24	77	19	66	47	1	1	49	1.22
909622--909674	22	2.3	23	78	15	56	45	0	1	52	1.11
909871--909987	41	2.8	41	78	7	119	52	13	14	19	1.75
913558--913590	17	1.9	17	88	11	50	51	0	3	45	1.16
924316--924354	18	2.2	18	85	0	51	66	0	0	33	0.92
925639--925899	20	12.9	20	78	14	150	39	22	20	16	1.92
925700--925877	62	2.9	63	78	14	176	37	25	21	15	1.93
925660--925911	82	3.1	82	73	16	202	39	23	21	16	1.92
925716--925911	40	4.8	40	80	9	200	38	24	20	16	1.93
925720--925911	20	9.4	20	82	10	176	37	25	20	16	1.93
926022--926054	6	5.5	6	100	0	66	33	51	15	0	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
931145--931195	19	2.7	20	85	11	63	60	0	0	39	0.97
963445--963472	14	2.0	14	100	0	56	50	7	0	42	1.30
964215--964239	11	2.3	11	100	0	50	40	0	0	60	0.97
965961--966019	30	2.0	30	100	0	118	33	35	6	23	1.82
971833--971859	12	2.2	12	100	0	54	66	18	7	7	1.40
972097--972137	2	21.0	2	95	5	75	48	0	0	51	1.00
972746--973110	179	2.0	184	96	3	677	47	12	12	27	1.76
974019--974088	36	1.9	36	94	0	122	10	22	17	50	1.76
975676--975718	20	2.2	20	91	0	68	32	11	20	34	1.89
977569--977722	68	2.3	66	80	9	154	29	6	13	50	1.66
986216--986282	35	1.9	35	96	0	125	29	16	14	38	1.89
993231--993850	260	2.4	256	86	6	861	41	19	12	26	1.87
1007942--1008197	125	2.0	129	96	3	477	38	7	8	45	1.63
1013306--1013342	17	2.2	17	95	0	65	43	13	0	43	1.44
1013314--1013347	17	2.0	17	94	0	59	44	11	0	44	1.40
1014821--1014860	16	2.6	16	88	4	55	37	12	20	30	1.89
1022156--1022336	89	2.0	89	98	0	353	34	18	22	24	1.96
1023150--1023187	16	2.4	16	95	0	67	13	39	42	5	1.66
1023803--1023865	24	2.5	26	75	17	69	58	0	0	41	0.98
1024050--1024192	60	2.4	61	83	3	173	20	32	30	15	1.94
1030157--1030215	25	2.3	27	82	5	68	54	0	1	44	1.10
1035885--1035927	21	2.0	21	100	0	86	23	23	25	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1040966--1040999	3	11.3	3	100	0	68	35	0	0	64	0.94
1047733--1047761	2	14.5	2	100	0	58	48	0	0	51	1.00
1053586--1053617	2	16.5	2	93	6	57	50	0	0	50	1.00
1054186--1054224	20	2.1	18	85	9	51	64	17	7	10	1.48
1055627--1056007	191	2.0	190	96	0	708	29	22	17	30	1.96
1057425--1057481	28	2.0	28	86	6	80	43	0	5	50	1.24
1058779--1059128	174	2.0	176	97	1	659	36	8	16	38	1.80
1060504--1060528	12	2.1	12	100	0	50	44	0	0	56	0.99
1060792--1060846	15	3.7	14	76	9	56	43	5	12	38	1.66
1060798--1060861	30	2.2	29	91	2	101	46	6	10	35	1.64
1061203--1061279	28	2.7	29	81	16	99	53	1	1	44	1.17
1061298--1061348	21	2.3	23	86	10	70	49	0	0	50	1.00
1061532--1061638	42	2.5	42	90	0	169	53	17	13	15	1.73
1062030--1062099	9	7.7	9	74	17	56	61	2	4	31	1.30
1070795--1070831	10	3.5	11	85	10	51	8	21	10	59	1.56
1077995--1078026	2	16.0	2	100	0	64	50	0	0	50	1.00
1083897--1083923	2	13.5	2	100	0	54	48	0	0	51	1.00
1097916--1097993	38	2.0	40	80	11	92	10	16	39	33	1.83
1108496--1108550	22	2.5	22	84	0	74	38	10	12	38	1.79
1109652--1109780	60	2.1	61	81	9	149	33	20	3	42	1.70
1114127--1114160	10	3.3	10	91	4	50	0	2	52	44	1.16
1117068--1117106	18	2.2	18	90	9	62	71	0	15	12	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1117109--1117193	45	1.9	44	82	2	107	40	17	27	15	1.89
1118310--1119192	212	4.1	214	85	3	1147	34	14	18	32	1.91
1119562--1120132	55	10.6	55	82	4	585	33	14	21	30	1.93
1120334--1120368	3	11.7	3	88	11	54	37	0	0	62	0.95
1121160--1121186	14	1.9	14	100	0	54	0	0	55	44	0.99
1121870--1121908	12	3.2	12	92	0	60	38	0	2	58	1.12

Tables:   1   2   3   4

The End!