Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008362.1 Hibiscus syriacus cultivar Beakdansim tig00111101_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  636979

Tables:   1   2   3   

This is table  3  of  3  ( 270 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
555499--555884
165
2.3
165
99
0
763
22
21
25
30
1.99
562446--562738
36
8.2
35
71
19
187
44
6
3
45
1.46
562476--562565
33
2.6
34
84
6
103
44
4
5
45
1.47
563616--563656
2
21.0
2
90
5
66
46
0
2
51
1.14
568031--568070
21
2.0
20
85
5
53
35
0
25
40
1.56
582644--582710
19
3.5
19
82
13
84
43
0
0
56
0.99
584030--584091
3
21.0
3
76
15
58
27
1
1
69
1.07
584369--584424
29
1.9
28
85
7
76
42
0
0
57
0.99
584383--584433
26
2.0
26
84
7
68
43
0
0
56
0.99
587458--587525
34
2.0
34
86
11
95
45
7
8
38
1.63
589082--589124
22
2.0
22
86
9
61
53
4
0
41
1.21
603988--604023
18
2.0
18
100
0
72
33
38
11
16
1.84
605562--605718
20
7.8
20
75
5
100
26
20
15
36
1.93
605522--605718
20
9.8
21
72
7
90
28
20
15
36
1.93
605553--605620
21
3.2
20
74
15
66
27
20
19
32
1.97
605632--605750
40
3.0
40
77
11
122
30
20
10
39
1.85
605642--605750
20
5.6
20
76
10
100
31
20
10
38
1.85
605714--605749
18
2.0
18
88
0
54
38
13
5
41
1.68
610108--610145
16
2.4
16
91
4
60
39
5
0
55
1.23
610855--610897
19
2.3
19
87
0
59
39
4
2
53
1.34
614051--614130
39
2.1
39
88
4
117
46
5
12
36
1.64
614166--614202
18
2.1
18
100
0
74
56
0
21
21
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
617635--617668
17
2.0
17
100
0
68
41
23
11
23
1.87
623525--623601
40
1.9
40
84
5
102
37
16
14
31
1.89
624586--624672
25
3.4
25
69
12
61
42
21
9
26
1.83
624571--624676
51
2.1
52
89
1
160
40
19
10
29
1.85
625724--625803
34
2.4
34
97
0
151
36
5
10
48
1.58
631785--631845
30
2.0
31
87
3
88
42
1
4
50
1.33
634414--634445
16
2.0
17
88
11
50
31
12
9
46
1.73
636585--636614
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1   2   3

The End!