Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008377.1 Hibiscus syriacus cultivar Beakdansim tig00111137_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92755

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1526--1554
15
1.9
15
100
0
58
27
13
13
44
1.82
3507--3633
31
4.1
31
90
0
191
28
16
18
36
1.93
7396--7584
31
6.1
31
93
0
306
28
17
17
35
1.94
8508--8811
160
1.9
160
88
1
466
27
15
6
50
1.70
8950--9013
28
2.3
28
78
7
69
25
21
3
50
1.64
20557--20584
10
2.8
10
100
0
56
28
21
10
39
1.87
28073--28154
18
4.4
18
79
11
67
24
29
19
26
1.98
28105--28154
19
2.7
18
87
6
73
24
28
22
26
1.99
28820--28857
18
2.1
18
90
0
58
34
7
5
52
1.53
30563--30730
79
2.1
81
88
5
252
32
1
11
55
1.43
36746--36770
2
12.5
2
100
0
50
52
0
0
48
1.00
36928--36979
13
4.2
12
82
9
61
34
15
21
28
1.94
37286--37316
16
1.9
16
100
0
62
12
0
3
83
0.75
38867--38913
21
2.2
21
88
0
67
38
17
25
19
1.92
39936--40009
32
2.3
32
88
0
103
32
14
22
29
1.94
40607--40849
135
1.8
134
85
4
346
24
27
18
29
1.98
42696--42726
5
6.2
5
92
0
53
19
3
0
77
0.90
42690--42723
15
2.2
16
94
5
61
17
8
0
73
1.08
47617--47671
21
2.6
21
85
0
83
7
32
41
18
1.78
52280--52380
29
3.5
30
75
10
102
60
9
10
18
1.57
53640--53713
3
25.3
3
83
5
53
43
0
0
56
0.99
53652--53712
9
6.9
9
81
3
61
45
0
0
54
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55922--55969
3
16.7
3
82
8
64
64
0
2
33
1.05
58110--58211
17
5.8
17
77
6
87
39
16
22
21
1.92
58767--58866
49
2.0
49
82
3
121
43
11
9
37
1.72
65519--65691
85
2.0
85
94
0
301
32
10
25
31
1.89
66226--66322
49
2.0
49
95
0
176
28
11
30
28
1.91
68950--68989
2
20.0
2
100
0
80
50
0
0
50
1.00
70378--70425
3
15.7
3
83
12
62
62
0
0
37
0.95
70375--70414
19
2.1
19
95
0
71
60
0
0
40
0.97
70564--71505
378
2.5
381
95
0
1710
36
21
19
22
1.95
70564--71505
76
12.4
76
96
0
1672
36
21
19
22
1.95
72181--72237
22
2.6
23
86
8
82
42
10
14
33
1.79
72602--72757
54
2.9
54
89
1
233
21
25
16
36
1.94
83645--83688
3
14.7
3
82
17
56
63
0
0
36
0.95
83642--83677
18
2.0
18
100
0
72
61
0
0
38
0.96
83643--83688
18
2.6
18
89
6
67
63
0
0
36
0.95
87257--87298
22
1.9
22
85
9
59
50
4
0
45
1.23
91157--91231
3
24.7
3
80
20
77
38
0
0
61
0.96
91157--91231
11
6.9
11
76
23
79
38
0
0
61
0.96
91160--91223
16
3.9
16
81
18
71
39
0
0
60
0.97

Tables:   1

The End!