genome.fa.s8386.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008386.1 Hibiscus syriacus cultivar Beakdansim tig00111149_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  339444

Tables:   1   2   

This is table  2  of  2  ( 164 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264139--264196	25	2.4	23	78	18	64	65	3	0	31	1.09
269603--269716	60	1.9	60	83	3	149	34	23	5	36	1.78
270928--270968	17	2.4	18	84	8	59	56	0	0	43	0.99
274612--274688	37	2.1	37	82	4	93	46	1	3	48	1.28
278317--278367	23	2.4	20	87	9	66	25	0	17	56	1.41
285228--285264	2	18.5	2	100	0	74	51	0	0	48	1.00
305589--305957	20	18.5	20	85	4	458	34	26	18	20	1.96
306860--306884	12	2.1	12	100	0	50	72	0	28	0	0.86
309165--309470	19	17.4	19	80	16	367	46	18	20	14	1.83
309165--309492	33	9.5	33	78	16	264	46	18	21	14	1.84
309193--309470	52	5.2	52	92	5	379	46	17	21	14	1.83
309232--309470	71	3.4	70	86	10	369	46	17	20	14	1.83
309499--309600	19	5.6	19	85	12	151	14	23	17	44	1.86
309707--309743	14	2.6	14	91	0	65	45	21	0	32	1.52
311646--311761	19	6.6	19	75	19	108	45	22	19	12	1.83
311683--311739	14	3.7	14	77	20	60	45	22	21	10	1.82
311664--311756	33	2.8	33	95	0	168	47	21	20	10	1.80
311757--311885	19	7.3	19	75	17	125	8	17	28	45	1.77
311757--311848	33	2.8	33	93	3	150	7	18	28	45	1.76
311929--312308	93	4.1	93	98	0	744	46	18	12	22	1.83
311929--312308	185	2.0	186	98	0	744	46	18	12	22	1.83
314015--314104	14	5.7	14	74	23	81	42	23	25	8	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314007--314121	33	3.5	33	95	0	212	45	20	24	9	1.81
314014--314126	19	6.8	18	72	23	88	43	22	24	9	1.83
314138--314192	14	3.6	14	73	21	56	9	25	23	41	1.83
314122--314192	33	2.2	33	94	0	124	8	22	25	43	1.81
314133--314214	33	2.5	33	89	2	119	9	25	21	42	1.84
314145--314233	20	4.8	20	72	19	75	12	24	19	43	1.85
314313--314383	33	2.2	33	92	0	115	47	18	22	11	1.80
314564--314618	22	2.5	22	81	0	74	20	16	40	23	1.91
314764--314956	20	9.6	20	82	5	219	19	19	25	35	1.95
314764--314956	60	3.2	60	83	0	251	19	19	25	35	1.95
315012--315063	20	2.6	20	96	0	95	21	13	26	38	1.90
319590--319667	31	2.5	31	91	0	129	44	8	15	30	1.77
320015--320061	15	3.1	15	71	17	51	17	23	17	42	1.88
320232--320268	15	2.5	15	90	0	65	32	29	5	32	1.80
323073--323104	13	2.4	14	94	5	57	46	3	0	50	1.17
327395--327563	50	3.3	50	85	6	232	19	15	14	50	1.77
328966--329028	31	2.2	28	81	15	76	31	26	20	20	1.98
329750--329793	20	2.2	20	92	4	72	38	4	18	38	1.71
330169--330225	19	2.7	21	81	10	64	56	3	17	22	1.56
330330--330439	44	2.5	44	81	13	122	46	2	2	48	1.31
330435--330553	63	1.9	63	86	6	170	45	8	5	41	1.56
336686--336725	21	1.9	21	89	0	62	10	25	40	25	1.86

Tables:   1   2

The End!