Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000084.1 Hibiscus syriacus cultivar Beakdansim tig00000154_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66784

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3929--3954
2
13.0
2
100
0
52
50
0
0
50
1.00
5050--5088
19
2.1
19
85
0
51
33
0
7
58
1.26
5763--5832
35
2.0
35
86
5
97
32
14
25
27
1.94
6566--6652
42
2.1
42
82
0
102
28
16
19
35
1.93
12543--12656
36
3.1
36
66
19
92
30
12
7
49
1.69
12513--12656
73
2.0
72
94
2
254
31
13
6
47
1.69
13813--13871
3
19.7
3
100
0
118
67
0
0
32
0.91
15608--15634
2
13.5
2
100
0
54
51
0
0
48
1.00
16761--16804
21
2.1
21
91
0
70
38
6
0
54
1.27
23803--23862
20
3.1
19
88
9
86
18
36
28
16
1.93
25138--25185
19
2.5
20
82
3
62
52
6
12
29
1.63
25771--25806
18
2.0
18
100
0
72
33
22
11
33
1.89
25772--25810
18
2.2
18
95
0
69
38
23
7
30
1.83
26617--26720
20
5.1
20
83
3
127
20
32
28
18
1.96
26617--26720
41
2.5
40
83
4
136
20
32
28
18
1.96
26694--26745
26
2.0
26
85
3
70
13
51
23
11
1.73
29681--29725
19
2.4
18
82
10
54
57
0
4
37
1.19
33935--33996
2
31.0
2
93
6
108
50
0
1
48
1.10
34963--35011
20
2.5
20
93
6
82
46
0
12
40
1.41
38971--39126
64
2.5
64
79
9
176
26
18
19
34
1.95
39160--39237
21
3.7
21
100
0
156
32
20
19
28
1.97
42037--42066
3
10.0
3
100
0
60
66
0
0
33
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42310--42379
18
3.9
18
77
9
72
40
10
10
40
1.72
44657--44700
22
2.0
22
82
8
54
47
20
9
22
1.78
44992--45032
19
2.2
19
100
0
82
14
14
43
26
1.84
51567--51633
2
33.5
2
100
0
134
50
0
0
49
1.00
57642--57666
12
2.1
12
100
0
50
20
16
24
40
1.91
62119--62147
10
2.9
10
100
0
58
41
10
41
6
1.66

Tables:   1

The End!