genome.fa.s8436.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008436.1 Hibiscus syriacus cultivar Beakdansim tig00111234_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1066897

Tables:   1   2   3   4   

This is table  4  of  4  ( 431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
915645--915807	59	2.7	59	92	0	254	48	7	3	40	1.49
915845--915937	37	2.5	37	92	1	161	44	10	10	34	1.74
923690--923753	33	1.9	33	83	0	83	21	23	15	39	1.92
926189--926557	20	18.5	20	84	4	449	34	26	18	20	1.95
927231--927277	24	2.0	24	87	8	69	25	14	21	38	1.92
927452--927476	12	2.1	12	100	0	50	72	0	28	0	0.86
929783--930090	19	17.4	19	78	17	351	47	18	20	14	1.83
929783--930112	33	9.5	34	79	16	276	46	18	20	14	1.83
929811--930090	52	5.2	53	90	5	351	47	17	21	14	1.83
929850--930090	71	3.4	71	83	11	348	47	17	20	14	1.83
930119--930220	19	5.6	19	85	12	151	14	23	17	44	1.86
930327--930363	14	2.6	14	91	0	65	45	21	0	32	1.52
930358--930430	12	6.0	12	67	20	53	57	16	1	24	1.47
930344--930416	38	1.9	38	97	0	137	53	16	1	28	1.51
932232--932347	19	6.6	19	75	19	108	45	22	19	12	1.83
932269--932325	14	3.7	14	77	20	60	45	22	21	10	1.82
932250--932342	33	2.8	33	95	0	168	47	21	20	10	1.80
932343--932471	19	7.3	19	75	17	125	8	17	28	45	1.77
932343--932434	33	2.8	33	93	3	150	7	18	28	45	1.76
932515--932894	93	4.1	93	99	0	753	46	18	12	22	1.83
932515--932894	185	2.0	186	99	0	753	46	18	12	22	1.83
934600--934689	14	5.7	14	74	23	81	42	23	25	8	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
934592--934706	33	3.5	33	95	0	212	45	20	24	9	1.81
934599--934711	19	6.8	18	72	23	88	43	22	24	9	1.83
934723--934777	14	3.6	14	73	21	56	9	27	23	40	1.85
934898--934968	33	2.2	33	92	0	115	47	18	22	11	1.80
935149--935203	22	2.5	22	81	0	74	20	16	40	23	1.91
935349--935541	20	9.6	20	82	5	219	19	19	25	35	1.95
935349--935541	60	3.2	60	83	0	251	19	19	25	35	1.95
935597--935648	20	2.6	20	96	0	95	21	13	26	38	1.90
966965--967023	29	2.0	29	100	0	118	23	13	13	49	1.78
970929--970978	2	25.0	2	95	0	91	50	2	0	48	1.12
972569--972648	35	2.3	35	79	12	85	55	11	8	25	1.64
972862--972902	18	2.2	19	86	4	57	14	34	19	31	1.92
972862--972909	9	5.2	9	77	5	51	12	33	20	33	1.90
974453--974558	50	2.1	50	83	0	131	23	28	33	15	1.95
976433--976481	2	24.5	2	100	0	98	48	0	0	51	1.00
978309--978345	2	18.5	2	100	0	74	48	0	0	51	1.00
979862--979947	2	44.0	2	90	4	140	50	0	0	50	1.00
984919--984964	3	15.3	3	95	0	83	63	0	2	34	1.07
989846--989907	32	2.0	31	83	3	79	38	4	11	45	1.61
1003016--1003048	18	1.9	17	88	11	50	45	0	0	54	0.99
1010260--1010284	2	12.5	2	100	0	50	52	0	0	48	1.00
1031900--1031970	31	2.3	31	90	0	106	49	8	9	32	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1032986--1033018	15	2.3	15	90	10	52	27	6	3	63	1.32
1039302--1039329	2	14.0	2	100	0	56	50	0	0	50	1.00
1039796--1039843	23	2.1	23	88	0	69	35	12	18	33	1.89
1040565--1040601	18	2.1	18	89	0	56	51	10	5	32	1.60
1040805--1040869	23	2.8	23	90	0	94	38	18	7	35	1.80
1041221--1041274	23	2.5	20	75	18	54	42	18	1	37	1.61
1041236--1041298	23	2.7	23	90	0	90	38	19	6	36	1.77
1043844--1044697	367	2.3	368	98	0	1631	34	15	14	35	1.89
1043844--1044697	184	4.7	184	98	0	1631	34	15	14	35	1.89
1046053--1046139	3	29.0	3	77	0	84	24	34	5	35	1.79
1046053--1046154	18	5.7	18	79	0	87	22	34	6	36	1.81
1046061--1046151	42	2.2	42	91	0	146	21	35	7	35	1.83
1047616--1048037	198	2.1	197	94	3	751	32	15	15	36	1.89
1048115--1048159	19	2.4	19	92	0	72	57	8	2	31	1.41
1049940--1050005	33	2.0	33	87	0	96	24	45	1	28	1.62
1052108--1052160	24	2.2	24	83	6	63	26	7	13	52	1.66
1052470--1052516	20	2.3	20	89	10	78	17	17	10	55	1.69
1057121--1057170	16	3.1	16	97	0	91	54	6	10	30	1.58
1058315--1058492	80	2.2	78	91	3	284	22	22	25	29	1.99
1058546--1059714	103	11.3	106	91	4	1753	23	17	26	33	1.96
1058551--1059707	311	3.7	311	89	5	1704	23	17	26	33	1.96
1059785--1060610	209	4.0	212	92	3	1356	23	18	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1059785--1060616	104	8.0	105	93	2	1299	23	18	26	32	1.97
1060688--1062287	105	15.5	105	90	5	2401	23	17	26	32	1.97
1060688--1062288	208	7.8	209	89	5	2449	23	17	26	32	1.97
1060688--1062288	309	5.2	312	90	5	2409	23	17	26	32	1.97
1066028--1066076	16	3.1	16	97	2	91	53	6	10	30	1.59

Tables:   1   2   3   4

The End!