genome.fa.s8438.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008438.1 Hibiscus syriacus cultivar Beakdansim tig00111237_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  406264

Tables:   1   2   

This is table  2  of  2  ( 153 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293383--293459	29	2.7	29	89	2	120	29	7	15	46	1.74
293190--293512	175	1.9	174	96	1	594	28	11	13	46	1.78
293237--293545	146	2.1	146	84	9	402	29	10	14	45	1.78
293495--293598	52	2.0	53	94	3	183	32	13	17	36	1.89
293568--293626	28	2.2	28	81	6	68	35	6	16	40	1.76
293582--293719	28	4.5	28	72	19	116	31	10	13	44	1.76
293630--293751	37	3.5	36	73	15	130	31	13	10	44	1.77
293597--293811	67	3.3	67	87	5	271	29	12	12	46	1.78
294502--294575	35	2.1	36	87	5	107	37	18	10	32	1.86
294550--294688	66	2.1	65	80	5	154	28	21	13	36	1.92
294913--295418	40	11.8	45	72	15	335	25	31	20	22	1.98
294912--295472	129	4.3	129	90	3	862	25	31	19	23	1.98
294919--295338	83	4.9	84	74	13	372	25	31	19	23	1.98
294913--295429	258	2.0	258	96	1	957	25	31	19	23	1.98
295625--295681	3	18.7	3	75	10	53	28	5	1	64	1.25
299065--299105	20	2.2	19	83	16	50	39	9	9	41	1.71
299965--300036	37	2.0	37	94	5	130	20	31	30	16	1.95
321283--321365	40	2.1	40	97	0	157	15	48	19	16	1.82
327656--327815	79	2.0	79	93	0	275	31	17	20	30	1.95
331874--331949	40	1.9	40	97	0	143	52	19	10	17	1.73
336386--336443	23	2.5	23	85	0	80	25	10	17	46	1.79
341050--341152	36	2.9	36	91	0	170	22	15	18	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349126--349228	36	2.9	36	97	0	188	23	16	17	42	1.88
352820--352853	10	3.4	10	95	0	59	73	0	0	26	0.83
359363--359404	2	21.0	2	100	0	84	50	0	0	50	1.00
360971--361110	72	1.9	73	88	1	210	22	12	16	47	1.80
370463--370628	83	2.0	83	100	0	332	21	20	14	43	1.87
374483--374530	24	2.0	24	95	0	87	29	27	8	35	1.86
374879--374937	29	2.2	26	76	21	68	25	11	8	54	1.65
375034--375094	21	3.0	20	78	7	77	26	4	16	52	1.64
375278--375304	14	1.9	14	100	0	54	33	0	14	51	1.43
375278--375342	14	4.6	14	74	14	53	26	3	13	56	1.52
389841--389909	31	2.3	29	85	5	84	47	2	2	46	1.32

Tables:   1   2

The End!