Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008440.1 Hibiscus syriacus cultivar Beakdansim tig00111239_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  518054

Tables:   1   2   3   

This is table  3  of  3  ( 273 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
465934--465959
6
4.3
6
100
0
52
46
0
15
38
1.46
465980--466021
17
2.6
16
85
11
50
42
2
0
54
1.13
471091--471115
12
2.1
12
100
0
50
56
0
12
32
1.36
477636--477728
42
2.2
42
92
0
159
13
22
21
41
1.88
477649--477719
21
3.4
21
69
21
67
9
21
22
46
1.80
480595--480741
73
2.0
72
98
1
285
24
21
9
44
1.81
486245--486296
23
2.2
23
83
10
61
38
11
5
44
1.65
486496--486533
17
2.2
17
90
0
58
50
13
13
23
1.76
492034--492078
20
2.2
20
84
0
54
28
22
15
33
1.95
492446--492544
43
2.3
43
96
0
180
24
17
24
34
1.96
501843--501962
13
8.8
13
69
20
52
46
3
3
46
1.35
501848--501936
31
2.9
30
78
20
103
48
3
2
46
1.31
501878--501942
18
3.5
20
80
16
77
46
3
1
49
1.27
502149--502232
20
4.5
19
80
11
84
44
0
28
27
1.55
502162--502226
19
3.3
20
79
12
73
43
0
30
26
1.55
502124--502212
46
2.0
45
84
10
119
46
0
26
26
1.53
502377--502455
10
7.6
11
75
16
64
45
1
7
45
1.40
502425--502454
2
15.0
2
100
0
60
50
0
0
50
1.00
502583--502631
24
2.0
24
88
0
71
46
6
10
36
1.63
502736--502768
14
2.3
15
85
15
52
51
18
3
27
1.60
503099--503157
17
3.3
19
83
9
63
47
6
6
38
1.57
503126--503159
9
3.9
9
84
7
52
55
5
0
38
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
503119--503157
17
2.2
18
95
4
71
51
5
2
41
1.38
503237--503288
7
7.4
7
82
0
50
46
28
0
25
1.53
503288--503327
16
2.5
16
88
8
55
37
7
12
42
1.71
503519--503572
23
2.4
23
84
3
65
31
3
18
46
1.67
504868--504934
33
2.1
33
88
8
102
46
0
14
38
1.45
505013--505131
22
5.5
22
83
8
111
52
1
9
36
1.43
504984--505188
44
4.8
42
75
15
156
53
0
7
38
1.37
504980--505158
65
2.8
65
82
7
204
53
1
7
37
1.40
505069--505177
36
3.0
36
86
8
141
54
1
7
36
1.39
505142--505214
29
2.5
30
85
10
91
52
0
4
43
1.20
505386--505443
16
3.6
16
84
6
64
36
17
24
22
1.95

Tables:   1   2   3

The End!