genome.fa.s8443.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008443.1 Hibiscus syriacus cultivar Beakdansim tig00111245_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81342

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1451--1504	2	29.5	2	78	17	64	48	0	1	50	1.11
1455--1502	17	2.9	17	87	6	73	47	0	2	50	1.12
1455--1504	21	2.5	21	83	6	68	48	0	2	50	1.12
4479--4635	64	2.5	62	81	7	170	33	17	23	24	1.96
4643--4680	20	1.9	20	94	0	67	31	18	23	26	1.97
5787--5816	2	15.0	2	100	0	60	50	0	0	50	1.00
8347--8413	34	1.9	34	82	14	84	22	13	20	43	1.87
10122--10166	21	2.1	21	87	0	63	22	4	28	44	1.72
11591--11617	11	2.5	11	100	0	54	40	0	7	51	1.30
12774--12807	17	2.0	17	88	0	50	47	2	0	50	1.16
22685--22715	6	5.2	6	100	0	62	16	32	19	32	1.94
24526--24571	2	23.0	2	100	0	92	50	0	0	50	1.00
24850--24928	35	2.1	35	84	11	95	54	5	1	39	1.30
24954--25006	26	2.0	28	85	14	76	58	3	1	35	1.27
27635--27663	2	14.5	2	100	0	58	48	0	0	51	1.00
27890--27993	49	2.1	49	92	5	174	22	9	5	62	1.47
29022--29069	15	3.1	15	78	6	51	50	2	2	45	1.25
30496--30569	38	1.9	38	94	0	130	51	18	5	24	1.67
34329--34380	20	2.6	20	96	0	95	38	26	13	21	1.90
34370--34468	21	4.8	20	72	6	72	36	23	19	21	1.95
34435--34628	20	9.6	20	81	5	221	35	25	19	19	1.95
34435--34628	60	3.2	60	83	0	253	35	25	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34773--34826	22	2.5	22	78	3	65	24	38	16	20	1.92
35008--35078	33	2.2	33	92	0	115	11	22	18	47	1.80
35199--35253	14	3.6	14	73	21	56	40	23	27	9	1.85
35199--35269	33	2.2	33	92	0	115	42	25	23	8	1.82
35265--35362	19	5.7	19	70	22	81	10	24	22	42	1.84
35287--35376	14	5.7	14	74	23	81	8	25	23	42	1.83
35270--35384	33	3.5	33	95	0	212	9	24	20	45	1.81
37082--37463	185	2.1	186	98	0	748	22	12	18	46	1.83
37082--37461	93	4.1	93	98	0	744	22	12	18	46	1.83
37505--37633	19	7.3	19	75	17	125	45	28	17	8	1.77
37541--37633	33	2.8	32	91	4	150	46	27	18	7	1.76
37505--37633	52	2.5	52	74	14	140	45	28	17	8	1.77
37629--37746	19	6.7	19	77	18	130	9	20	23	46	1.79
37651--37707	14	3.7	14	77	20	60	8	21	24	45	1.80
37634--37726	33	2.8	33	98	0	177	9	20	22	47	1.79
37698--37762	19	3.4	19	85	4	78	10	16	27	44	1.81
39577--39647	37	1.9	37	97	0	133	29	1	16	52	1.53
39629--39664	14	2.6	14	95	0	63	33	0	22	44	1.53
39771--39872	19	5.6	19	84	13	151	44	17	23	14	1.86
39901--40226	19	18.4	19	80	15	405	14	20	17	47	1.82
39879--40198	52	6.0	52	94	4	550	14	21	16	46	1.83
39901--40226	71	4.6	72	82	13	389	14	20	17	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39879--40198	161	2.0	157	93	3	552	14	21	16	46	1.83
39920--40226	33	8.8	33	80	12	280	14	20	17	47	1.82
42724--42770	24	2.0	24	87	8	69	38	21	14	25	1.92
43442--43810	20	18.5	20	86	4	458	20	18	26	34	1.96
45304--45389	21	4.0	21	80	4	84	24	16	24	34	1.95
46011--46068	20	3.0	20	75	12	57	58	20	3	17	1.53
46009--46071	19	3.2	20	76	10	67	58	19	3	19	1.52
49083--49107	13	1.9	13	100	0	50	80	0	8	12	0.92
54058--54109	20	2.5	21	81	9	63	30	9	26	32	1.89
61446--61478	17	1.9	17	93	0	57	54	3	0	42	1.15
61458--61540	32	2.6	31	81	9	105	48	6	4	40	1.49
63895--63920	6	4.3	6	100	0	52	15	0	0	84	0.62
66544--66597	21	2.6	21	87	0	81	29	16	24	29	1.97
66586--66665	20	3.9	20	80	9	90	13	23	22	40	1.90
66629--66700	22	3.4	22	73	11	87	18	19	25	37	1.94
66650--66719	19	3.5	19	74	11	77	18	20	21	40	1.92
66609--66722	41	2.8	41	94	4	194	17	20	23	38	1.93
67330--67354	6	4.2	6	100	0	50	0	16	48	36	1.46
67424--67570	41	3.6	41	82	8	176	37	21	19	22	1.94
67474--67545	20	3.5	20	69	3	72	40	22	22	15	1.91
67474--67574	21	4.9	21	69	3	80	38	23	19	17	1.93

Tables:   1

The End!