Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008446.1 Hibiscus syriacus cultivar Beakdansim tig00111251_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  251382

Tables:   1   2   

This is table  2  of  2  ( 157 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
161103--161176
19
4.5
16
83
16
66
13
20
18
47
1.82
161099--161166
19
3.8
19
87
12
101
13
22
17
47
1.82
161281--161317
14
2.6
14
86
0
56
48
21
0
29
1.50
163179--163231
20
2.7
20
87
0
79
35
24
24
15
1.94
163219--163295
14
4.7
17
68
27
51
45
24
19
10
1.81
163234--163291
14
3.9
14
79
16
71
48
25
17
8
1.75
163219--163296
32
2.4
33
93
4
133
46
24
19
10
1.81
163306--163394
32
2.7
33
85
3
126
12
17
20
49
1.79
163385--163437
20
2.7
20
87
0
70
15
18
24
41
1.89
163917--163961
18
2.5
18
88
0
72
13
15
44
26
1.83
165275--165328
20
2.8
20
80
2
65
48
22
16
12
1.80
165562--165605
22
2.0
22
90
0
70
18
13
45
22
1.84
165787--165859
20
3.7
20
92
0
119
26
19
28
26
1.98
165870--165941
20
3.5
20
88
1
99
18
23
18
40
1.91
166379--166681
157
1.9
157
96
0
561
21
12
13
53
1.72
166705--166759
17
3.2
18
70
15
53
16
1
7
74
1.12
166705--166768
21
3.2
21
77
18
66
18
1
6
73
1.12
169204--169256
22
2.4
22
75
18
56
24
3
1
69
1.15
170105--170147
2
21.5
2
100
0
86
51
0
0
48
1.00
170444--170477
13
2.6
14
90
9
54
23
0
0
76
0.79
170463--170527
25
2.5
25
72
5
58
36
1
3
58
1.23
174443--174498
26
2.2
26
77
3
60
30
7
21
41
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
179366--179663
43
7.0
42
76
8
206
25
17
24
32
1.96
179392--179663
86
3.2
87
76
10
229
25
16
24
33
1.96
180080--180152
21
3.5
21
76
10
78
0
39
19
41
1.51
183684--183782
42
2.4
41
84
6
128
31
14
22
32
1.93
183873--184241
42
8.9
42
76
9
301
30
18
20
29
1.97
183907--184232
164
2.0
166
84
7
430
29
19
21
30
1.97
183932--184319
164
2.4
163
79
7
367
32
18
19
29
1.95
185392--185419
6
4.7
6
100
0
56
64
0
0
35
0.94
190120--190284
43
3.8
43
76
12
160
49
0
2
47
1.19
191053--191081
14
2.1
14
100
0
58
65
0
0
34
0.93
195128--195160
14
2.3
15
89
5
50
48
0
9
42
1.35
195113--195161
19
2.6
19
96
0
89
46
0
10
42
1.37
195341--195365
3
8.3
3
100
0
50
68
0
0
32
0.90
227980--228006
12
2.2
12
100
0
54
48
0
33
18
1.49
238900--238929
15
2.0
15
93
0
51
0
0
16
83
0.65

Tables:   1   2

The End!