genome.fa.s8464.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008464.1 Hibiscus syriacus cultivar Beakdansim tig00111277_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  593006

Tables:   1   2   3   4   

This is table  2  of  4  ( 367 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182576--182602	14	1.9	14	100	0	54	22	0	25	51	1.48
190636--190699	3	22.0	3	78	12	71	67	1	3	28	1.15
190638--190701	32	2.0	32	90	6	103	65	3	4	26	1.27
195232--195263	15	2.0	17	88	11	50	40	6	37	15	1.73
199969--200008	21	1.9	21	89	0	62	17	22	17	42	1.89
199966--200357	20	19.1	21	81	8	416	24	20	16	38	1.92
199966--200357	82	4.8	83	84	6	480	24	20	16	38	1.92
199966--200347	41	9.3	41	83	7	422	23	20	16	39	1.92
199990--200357	143	2.6	143	87	3	526	24	20	16	38	1.92
199990--200398	143	2.9	142	85	4	423	25	20	15	37	1.93
201220--201273	24	2.2	24	93	0	90	20	18	20	40	1.91
203788--203837	19	2.5	20	81	9	59	40	24	20	16	1.91
203810--203940	19	7.7	18	68	25	97	45	19	23	11	1.82
203828--203882	14	3.6	14	73	21	56	45	20	23	10	1.82
203810--203936	33	3.8	33	95	0	227	45	18	23	11	1.83
203936--203990	19	2.9	19	81	5	67	10	12	29	47	1.76
203965--204010	14	3.3	14	78	0	56	6	19	23	50	1.71
204130--204166	14	2.6	14	82	0	56	43	21	2	32	1.67
205555--205634	42	1.9	42	84	0	106	22	17	38	21	1.93
206028--206135	19	5.8	19	76	13	91	48	24	17	10	1.78
206160--206217	19	3.0	19	85	5	89	12	22	15	50	1.77
206306--206681	94	4.1	94	91	2	575	48	18	11	22	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208326--208424	19	5.1	19	86	4	135	45	18	23	13	1.84
208431--208467	19	1.9	19	94	0	65	8	24	21	45	1.78
209049--209142	20	4.7	20	85	2	134	21	21	19	38	1.94
209049--209142	41	2.3	40	88	1	134	21	21	19	38	1.94
210215--210249	18	2.0	18	88	5	54	68	0	0	31	0.90
212728--212819	28	3.3	28	69	11	80	40	4	11	43	1.61
212782--212884	29	3.6	28	75	13	93	35	0	13	49	1.49
212928--212962	15	2.4	15	95	4	63	31	0	0	68	0.90
214990--215039	25	2.0	25	100	0	100	12	36	12	40	1.79
219615--219664	26	1.9	26	100	0	100	16	34	8	42	1.77
221218--221352	67	2.0	67	100	0	270	31	22	20	25	1.98
221810--221836	11	2.5	11	100	0	54	11	25	29	33	1.91
230616--230648	2	16.5	2	100	0	66	51	0	48	0	1.00
234490--234588	31	3.2	31	85	5	137	53	10	6	30	1.58
234674--234743	29	2.6	27	71	18	65	60	5	0	34	1.21
234992--235056	25	2.6	24	80	4	67	44	12	9	33	1.74
235406--235444	7	5.4	7	81	6	51	25	0	0	74	0.82
237041--237095	26	2.1	28	86	10	80	25	3	7	63	1.37
237410--237492	27	3.0	28	96	3	159	43	21	6	28	1.76
243693--243728	2	18.0	2	100	0	72	50	0	0	50	1.00
246021--246061	14	2.9	14	85	0	55	29	9	26	34	1.88
250589--250628	11	3.3	13	80	13	50	47	0	2	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
252365--252406	3	14.7	3	85	9	61	64	0	0	35	0.94
252360--252398	9	4.6	9	90	9	55	58	0	0	41	0.98
252353--252398	17	2.6	17	86	3	65	58	0	0	41	0.98
252365--252406	20	2.1	20	90	0	66	64	0	0	35	0.94
252616--253290	45	14.9	45	93	1	1091	34	18	22	24	1.96
253944--254029	22	3.9	22	75	22	90	37	12	15	34	1.85
254962--255135	75	2.3	75	86	0	240	30	23	15	30	1.95
256055--256108	20	2.7	20	88	2	81	20	22	42	14	1.88
261684--261723	21	1.9	21	85	10	55	35	10	2	52	1.48
269093--269121	12	2.3	13	94	5	51	58	3	13	24	1.51
269092--269130	19	2.0	19	85	5	51	53	2	17	25	1.56
272539--272579	11	3.2	13	80	13	50	48	0	2	48	1.14
274321--274363	3	14.7	3	81	13	54	62	0	0	37	0.95
274571--275158	45	13.0	45	92	1	935	35	19	21	23	1.96
274571--275158	271	2.2	272	93	0	989	35	19	21	23	1.96
277518--277578	23	2.7	23	80	5	72	19	24	34	21	1.96
286314--286353	11	3.3	13	80	13	50	47	0	2	50	1.14
286637--286695	2	30.5	2	75	13	52	47	1	3	47	1.29
287864--287902	20	2.0	20	100	0	78	33	10	15	41	1.81
287904--287945	21	2.0	20	86	4	57	40	7	14	38	1.73
288731--288953	95	2.3	95	84	0	293	34	14	20	30	1.93
295088--295196	5	21.2	5	87	12	159	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295722--295748	2	13.5	2	100	0	54	48	0	0	51	1.00
296983--297016	10	3.4	10	95	0	59	85	0	0	14	0.60
300184--300224	21	1.9	22	90	5	66	46	2	4	46	1.37
300257--300286	3	10.0	3	100	0	60	66	0	0	33	0.92
303650--303779	65	2.0	65	96	1	244	16	16	21	45	1.85
308760--308826	31	2.3	28	84	7	80	50	5	0	43	1.26
308973--309034	29	2.3	25	81	10	70	50	1	4	43	1.33
308983--309041	29	2.2	26	81	9	64	54	0	5	40	1.23
314998--315029	15	2.1	15	100	0	64	25	31	25	18	1.98
317403--317523	60	2.0	60	100	0	242	27	8	23	41	1.82
317502--317583	15	5.5	15	88	2	121	37	7	19	35	1.80
317502--317583	30	2.8	30	94	1	139	37	7	19	35	1.80
317497--317583	45	2.0	44	93	2	147	40	6	19	33	1.78
317566--317635	20	3.5	20	92	0	122	40	11	14	34	1.82
317799--317869	27	2.6	26	82	12	81	52	1	1	45	1.18
317849--317932	24	3.4	26	73	18	81	45	1	1	52	1.16
317849--317933	29	3.0	29	77	16	81	45	1	1	51	1.16
318144--318256	42	2.7	41	95	2	199	45	19	19	15	1.86
318314--318375	14	4.3	15	79	8	74	37	8	19	35	1.81
318314--318375	29	2.1	29	94	5	108	37	8	19	35	1.81
318358--318425	19	3.5	20	86	6	104	42	8	14	33	1.77
318590--318657	29	2.4	28	78	14	75	52	1	2	42	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318647--318707	23	2.7	23	82	12	65	44	1	1	52	1.20
318700--318743	22	2.0	23	86	4	63	54	0	0	45	0.99
318590--318768	26	6.9	26	68	23	76	50	1	1	46	1.18
318704--318760	21	2.6	22	81	10	64	52	0	0	47	1.00
318605--318774	52	3.2	53	76	12	145	50	1	1	47	1.16
318845--318926	15	5.5	15	85	2	112	39	7	18	35	1.78
318845--318926	30	2.8	30	92	1	130	39	7	18	35	1.78
318840--318926	45	2.0	44	90	6	140	41	6	18	33	1.77
318909--318978	20	3.5	20	96	0	131	40	10	14	35	1.79
319058--319119	22	2.7	22	76	16	54	46	1	4	46	1.33
319132--319196	28	2.4	27	78	17	71	52	1	1	44	1.19
319173--319223	25	2.1	25	82	13	63	52	1	0	45	1.12
319186--319262	23	3.3	23	74	20	63	45	2	1	50	1.23
319243--319295	21	2.7	20	85	8	65	52	0	0	47	1.00
319145--319310	51	3.2	52	74	18	143	49	1	0	48	1.16
318314--319341	535	1.9	547	94	5	1829	42	4	8	43	1.56
319481--319602	43	2.9	43	95	1	210	42	18	21	17	1.89
319654--319716	15	4.3	15	83	4	83	38	7	19	34	1.81
319654--319716	30	2.1	30	97	2	119	38	7	19	34	1.81
319699--319768	20	3.5	20	96	0	131	40	10	14	35	1.79
320042--320080	20	2.0	20	89	0	60	53	0	0	46	1.00
320037--320109	30	2.4	29	80	17	87	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320290--320409	42	2.9	42	97	0	222	44	19	20	16	1.87
320460--320522	15	4.3	15	83	4	83	38	7	19	34	1.81
320460--320522	30	2.1	30	97	2	119	38	7	19	34	1.81
320505--320574	20	3.5	20	96	0	131	40	10	14	35	1.79
320790--320850	23	2.7	23	82	12	65	44	1	1	52	1.20
320843--320886	22	2.0	23	86	4	63	54	0	0	45	0.99
320847--320903	21	2.6	22	81	10	64	52	0	0	47	1.00
320744--320917	55	3.2	53	76	12	142	50	1	0	47	1.12
318864--321264	802	3.0	802	96	2	4432	43	8	11	36	1.72
321092--321211	42	2.9	42	97	0	222	44	19	20	16	1.87

Tables:   1   2   3   4