genome.fa.s8464.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008464.1 Hibiscus syriacus cultivar Beakdansim tig00111277_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  593006

Tables:   1   2   3   4   

This is table  3  of  4  ( 367 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321392--321502	42	2.6	42	97	0	204	46	18	18	15	1.84
325765--325848	24	3.4	24	64	22	57	32	17	8	41	1.80
327938--328038	10	9.1	10	70	19	67	10	10	19	58	1.61
327937--328006	13	5.8	12	73	20	58	11	8	18	61	1.54
327938--328028	23	3.9	23	80	8	112	10	10	19	58	1.62
334052--334155	2	55.0	2	70	14	78	50	0	0	49	1.07
334226--334311	42	2.0	42	93	0	145	15	39	13	31	1.86
334375--334415	21	2.0	21	100	0	82	24	24	24	26	2.00
341576--341619	23	1.9	23	95	0	79	27	27	25	20	1.99
342363--342683	160	2.0	159	98	1	617	36	16	14	32	1.89
342806--342849	20	2.1	21	87	4	63	25	27	22	25	2.00
343617--343660	23	1.9	23	85	0	61	27	20	27	25	1.99
348119--348145	14	1.9	14	100	0	54	25	0	22	51	1.48
353858--353891	16	2.1	16	94	0	59	32	8	26	32	1.87
361564--361601	14	2.6	15	83	4	51	68	0	2	28	1.03
361754--361783	6	5.2	6	92	8	53	50	0	0	50	1.00
361859--361900	14	2.9	16	76	23	56	61	0	0	38	0.96
368534--368609	18	4.1	19	76	18	79	38	9	11	40	1.74
368512--368607	39	2.4	40	80	1	131	35	11	13	39	1.81
368512--368609	18	5.1	17	70	23	70	35	11	13	39	1.80
370882--370918	16	2.2	17	95	4	67	35	18	21	24	1.96
371345--371375	16	1.9	16	93	0	53	54	3	9	32	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379945--380014	11	6.1	11	71	21	54	27	20	25	27	1.99
382330--382365	19	1.9	19	88	5	56	27	5	8	58	1.50
382865--382922	7	8.3	7	80	0	53	18	1	31	48	1.59
382865--382922	21	2.8	21	76	5	64	18	1	31	48	1.59
384913--385008	40	2.4	40	92	0	138	41	17	17	22	1.90
384893--385002	20	5.5	20	78	5	98	41	19	18	20	1.90
385013--385052	14	2.9	14	88	3	55	35	27	10	27	1.89
385126--385163	20	1.9	20	88	0	58	47	15	15	21	1.82
385218--385271	20	2.7	20	85	0	72	37	14	25	22	1.93
385322--385391	20	3.5	20	94	0	113	20	17	18	44	1.87
388105--388171	34	2.0	34	87	0	98	46	1	17	34	1.58
388812--389001	70	2.7	70	91	2	292	17	11	15	55	1.68
388906--389016	37	3.1	35	66	26	88	17	9	15	57	1.64
397355--397407	27	2.0	26	85	3	70	37	1	1	58	1.20
397661--397698	18	2.2	17	86	9	51	63	0	2	34	1.09
398940--398986	3	16.3	3	82	8	62	72	0	0	27	0.85
398940--399000	9	7.1	9	81	10	65	73	0	0	26	0.83
398945--399002	11	5.2	11	78	14	57	75	0	0	24	0.80
402985--403045	31	2.0	31	83	0	77	18	16	13	52	1.75
404159--404266	47	2.3	47	93	0	189	20	19	22	37	1.94
404248--404333	32	2.7	32	90	3	138	6	25	32	34	1.83
404455--404790	166	2.0	166	98	1	645	46	8	17	28	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
406429--406835	14	32.1	14	71	19	290	41	4	5	49	1.46
406479--406640	23	6.6	23	77	15	173	41	3	4	49	1.42
406425--406880	37	13.0	36	73	20	180	41	4	5	48	1.45
406525--406880	74	4.8	74	84	12	441	41	3	5	48	1.45
406776--406880	40	2.5	41	87	7	142	43	4	5	45	1.48
408579--408690	41	2.8	41	89	6	158	48	5	5	41	1.49
408587--408649	27	2.3	27	77	2	81	50	7	4	36	1.53
408638--408987	27	13.6	27	71	20	187	48	4	4	42	1.44
408706--408831	8	16.6	8	67	22	67	50	5	2	41	1.38
408613--408948	102	3.2	103	75	14	309	49	4	4	41	1.43
408666--408887	77	3.1	75	85	12	288	49	4	4	41	1.42
408886--408931	24	1.9	24	100	0	92	45	4	4	45	1.43
408921--408973	23	2.3	23	87	3	72	50	5	3	39	1.44
408587--408987	14	30.8	14	68	20	205	48	4	4	41	1.46
408666--408887	37	6.1	37	84	14	268	49	4	4	41	1.42
410927--411012	32	2.7	32	92	0	145	34	32	24	8	1.85
410999--411084	43	2.0	44	93	4	147	36	24	16	23	1.94
413815--413867	21	2.5	20	77	20	54	16	7	0	75	1.02
413821--413863	16	2.5	17	81	11	52	18	9	0	72	1.11
413941--413999	4	15.0	4	81	10	68	27	3	0	69	1.04
413941--414024	35	2.4	34	84	11	109	26	3	1	69	1.12
414034--414062	14	2.1	14	100	0	58	58	13	13	13	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417834--417949	46	2.5	47	90	4	182	31	3	8	56	1.47
419123--419192	12	5.8	12	72	12	54	52	18	12	15	1.74
419121--419215	24	4.0	24	80	2	102	50	17	12	18	1.77
419121--419229	48	2.3	48	85	3	139	51	17	12	18	1.76
419122--419227	24	4.4	24	75	7	99	50	17	12	18	1.77
434796--434820	8	3.1	8	100	0	50	88	0	0	12	0.53
447327--447371	21	2.1	21	95	0	81	24	20	48	6	1.73
459321--459391	33	2.2	33	100	0	142	29	19	23	26	1.98
461992--462063	37	2.0	36	91	2	117	50	6	13	29	1.68
467282--467346	28	2.3	28	81	0	76	38	24	20	16	1.93
467826--467903	2	39.0	2	100	0	156	50	0	0	50	1.00
477694--477785	39	2.4	39	96	0	148	31	20	26	21	1.98
478074--478191	60	2.0	60	89	0	182	20	11	11	56	1.65
480492--480565	20	3.7	20	96	0	130	27	24	33	14	1.94
480900--480934	12	2.9	12	100	0	70	25	8	40	25	1.84
498321--498473	23	6.7	23	96	0	272	38	26	9	25	1.87
498559--498609	20	2.5	20	84	6	59	60	13	11	13	1.59
498600--498637	20	1.9	20	88	0	58	52	15	10	21	1.72
501209--501341	18	7.4	18	70	1	88	10	6	36	45	1.65
501656--501847	103	1.9	104	95	1	350	30	8	29	31	1.87
502097--502195	28	3.3	29	67	23	80	36	10	5	48	1.59
502057--502195	61	2.3	61	88	2	201	37	10	5	46	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502309--502339	13	2.4	13	94	0	53	41	9	0	48	1.36
502309--502347	13	3.0	13	88	0	51	41	7	2	48	1.45
502349--502395	18	2.6	18	86	6	60	44	8	6	40	1.60
502474--502545	27	2.7	27	88	0	108	45	8	4	41	1.53
502590--502782	20	8.9	20	72	15	68	44	5	7	43	1.55
502665--502699	18	1.9	18	88	0	52	45	2	5	45	1.41
502712--502769	24	2.4	24	94	5	100	46	8	5	39	1.57
502735--502813	33	2.4	33	81	6	99	45	6	5	43	1.51
502805--502932	2	62.0	2	67	22	61	43	4	4	46	1.45
502805--502932	9	15.5	8	67	21	61	43	4	4	46	1.45
502875--502932	15	3.7	16	86	11	68	41	3	3	51	1.35
509120--509182	21	2.9	22	78	7	74	22	31	26	19	1.97
511046--511111	16	4.1	16	75	14	64	22	1	24	51	1.57
512552--512609	22	2.6	22	86	2	80	36	1	8	53	1.42
512754--513043	2	147.5	2	63	21	62	46	4	3	45	1.41
512779--512857	33	2.4	33	93	0	131	45	7	3	43	1.50
512849--513017	11	15.7	10	66	24	62	46	2	4	46	1.37
512890--513002	11	11.2	11	71	17	68	42	3	6	47	1.45
512882--513043	20	7.6	21	71	15	109	45	3	4	46	1.40
515572--515638	25	2.6	25	79	9	64	44	0	1	53	1.09
516429--516522	33	2.8	33	86	1	134	26	12	24	36	1.91
521355--521439	32	2.7	32	90	3	127	32	22	16	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
522487--522541	14	3.9	14	75	15	51	3	10	5	80	1.01
525137--525161	13	1.9	13	100	0	50	24	24	24	28	2.00
528143--528178	12	3.0	12	87	0	54	33	25	22	19	1.97
528214--528270	21	2.7	21	100	0	114	29	29	21	19	1.97
531847--531891	12	3.5	13	84	9	56	48	4	0	46	1.22
538798--538868	26	2.7	27	86	2	99	22	15	39	22	1.92
541473--541546	28	2.6	27	85	4	94	45	1	1	51	1.18
569963--570033	19	3.6	19	87	10	106	35	26	30	7	1.83
569964--570033	22	3.3	22	92	5	110	35	27	31	5	1.80
573572--573730	64	2.5	64	84	4	187	35	20	16	27	1.94

Tables:   1   2   3   4