genome.fa.s8466.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008466.1 Hibiscus syriacus cultivar Beakdansim tig00111280_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  685270

Tables:   1   2   3   4   

This is table  4  of  4  ( 439 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587316--587391	35	2.2	35	92	0	125	39	23	1	35	1.63
587788--588035	130	1.9	130	92	0	415	36	16	12	34	1.86
587802--588066	130	2.0	129	80	5	293	40	14	12	32	1.84
588360--588422	28	2.3	27	78	8	63	46	1	3	49	1.27
588503--588536	16	2.0	18	88	11	54	64	5	2	26	1.30
590364--590442	23	3.4	23	89	0	104	17	24	25	32	1.97
590372--590450	23	3.4	23	87	3	97	18	24	25	31	1.98
592184--592223	12	3.5	11	86	10	53	82	5	10	2	0.91
592159--592214	23	2.4	24	82	8	80	78	5	16	0	0.92
595827--595860	11	3.0	11	83	8	50	11	11	8	67	1.42
598594--598625	2	16.0	2	100	0	64	0	50	0	50	1.00
603015--603069	28	2.0	28	100	0	110	38	18	10	32	1.85
604755--604791	18	2.1	18	90	5	58	51	5	0	43	1.24
605864--605917	3	18.0	3	100	0	108	66	0	0	33	0.92
607973--608009	19	1.9	19	100	0	74	48	10	21	18	1.78
609460--609504	16	2.8	16	93	0	72	55	20	13	11	1.68
612589--612628	2	19.5	2	94	5	71	47	2	0	50	1.14
614481--614550	10	6.5	10	72	18	52	2	22	1	72	1.05
614482--614520	20	2.0	20	100	0	78	0	23	0	76	0.78
614541--614585	17	2.5	17	82	7	54	0	26	2	71	0.98
615975--616002	2	14.0	2	100	0	56	50	0	0	50	1.00
620514--620618	24	4.4	24	79	0	84	27	13	18	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
620529--620630	24	4.2	24	82	0	114	27	14	18	39	1.90
624976--625090	51	2.3	49	83	10	142	56	6	13	22	1.61
626485--626521	2	18.5	2	100	0	74	48	0	0	51	1.00
627142--627180	21	1.9	21	94	5	71	43	10	17	28	1.82
627694--627740	24	2.0	24	87	4	69	68	4	0	27	1.08
630532--630606	33	2.3	33	95	0	132	30	10	18	40	1.85
632059--632091	16	2.1	16	94	0	57	33	0	21	45	1.52
632059--632100	9	4.9	9	80	11	52	30	0	23	45	1.53
632314--632374	21	2.8	23	88	11	85	22	22	29	24	1.99
636646--636689	18	2.4	18	92	0	70	18	18	31	31	1.95
636678--636759	22	3.7	22	90	0	128	14	25	30	29	1.95
642903--643064	64	2.5	64	85	8	197	33	19	20	25	1.97
643612--643729	22	5.5	22	84	7	138	16	22	31	29	1.96
643626--643747	44	2.9	44	84	7	155	17	21	31	29	1.96
643626--643747	66	1.9	62	81	9	147	17	21	31	29	1.96
645910--646072	74	2.2	74	80	4	186	30	26	18	25	1.98
651257--651339	24	3.7	23	87	6	116	22	31	14	31	1.94
653641--653800	74	2.1	77	87	3	227	28	28	21	22	1.99
655562--655597	18	2.0	18	100	0	72	27	33	22	16	1.95
655515--655641	46	2.7	46	91	3	200	34	30	16	18	1.93
660311--660349	21	1.9	20	84	5	51	69	20	0	10	1.17
661177--661215	20	2.0	20	89	0	60	33	23	10	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
662745--663154	59	6.9	59	95	0	730	31	22	10	34	1.89
663476--663530	22	2.7	20	83	10	74	23	32	14	29	1.94
663572--663697	20	6.6	20	68	17	70	27	21	17	33	1.96
663589--663643	19	2.7	19	83	8	65	29	18	16	36	1.92
663474--663696	95	2.3	96	84	2	279	29	24	15	30	1.95
664273--664297	13	1.9	13	100	0	50	72	0	28	0	0.86
673876--673941	30	2.2	30	97	2	125	24	53	6	16	1.66
674256--674305	3	16.3	3	91	4	82	66	0	0	34	0.92
675470--675557	39	2.2	39	82	10	97	26	25	6	42	1.80
676528--676582	25	2.2	25	100	0	110	29	23	7	40	1.81
678147--678175	2	14.5	2	100	0	58	48	0	51	0	1.00
678223--678258	18	2.1	17	89	5	54	66	0	0	33	0.92
678415--678480	28	2.4	28	92	0	105	46	0	45	7	1.31
678415--678475	10	6.1	10	78	14	63	47	0	45	6	1.28
678416--678481	22	3.0	22	88	0	87	48	0	43	7	1.31
678415--678469	12	4.6	12	83	0	56	49	0	45	5	1.25
678509--678544	18	2.1	17	89	5	54	66	0	0	33	0.92
681924--681997	20	3.7	20	78	3	85	40	17	22	18	1.91
681941--682037	21	4.7	21	80	2	124	41	17	24	16	1.89
681924--682011	41	2.1	41	97	0	167	40	17	23	18	1.90
681919--682039	62	2.0	63	81	3	147	40	18	23	18	1.91
682026--682119	20	4.7	20	79	7	82	32	24	17	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
682023--682100	41	1.9	41	89	0	120	38	23	15	23	1.92
681941--682074	62	2.2	62	82	5	155	41	19	20	18	1.91
682307--682350	22	2.0	22	95	0	79	20	45	15	18	1.85
682611--682648	20	1.9	20	88	0	58	13	15	21	50	1.78
683951--683995	18	2.5	18	85	0	63	26	46	15	11	1.79
684464--684527	19	3.4	19	80	2	67	35	25	23	15	1.94
684500--684590	32	2.8	33	94	3	166	47	23	18	10	1.80
684500--684594	14	5.6	18	69	26	82	46	23	20	10	1.81
684606--684663	14	3.9	14	79	16	71	8	17	25	48	1.75
684601--684671	32	2.2	33	97	2	135	8	19	23	47	1.77
684664--684710	20	2.4	19	82	6	58	19	27	19	34	1.96
684652--684718	19	3.5	19	79	4	80	16	23	22	37	1.94
684876--684914	17	2.3	17	100	0	78	23	5	10	61	1.48

Tables:   1   2   3   4

The End!