genome.fa.s847.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000847.1 Hibiscus syriacus cultivar Beakdansim tig00001631_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  265150

Tables:   1   2   

This is table  2  of  2  ( 179 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180009--180045	3	12.0	3	94	5	65	32	0	32	35	1.58
185950--186017	27	2.5	27	83	4	84	33	11	1	52	1.47
186931--187056	8	15.8	8	76	0	90	38	25	1	34	1.66
186931--187056	24	5.2	24	78	3	101	38	25	1	34	1.66
186942--187056	56	2.1	56	93	3	196	40	24	1	33	1.66
190265--190318	21	2.6	21	81	0	63	25	11	40	22	1.87
191024--191059	2	18.0	2	100	0	72	50	0	0	50	1.00
191918--192006	30	3.0	30	91	1	135	31	26	21	20	1.98
192002--192102	31	3.2	31	80	8	132	33	18	18	28	1.95
193326--193370	21	2.1	21	87	0	63	15	24	28	31	1.96
195795--195834	20	2.0	20	100	0	80	15	20	40	25	1.90
197785--198174	194	2.0	196	98	1	766	35	11	19	33	1.88
199334--199391	29	2.0	29	100	0	116	20	27	37	13	1.91
201723--201820	39	2.5	39	100	0	196	36	22	10	30	1.87
202558--202589	16	1.9	17	93	6	57	15	12	28	43	1.83
209460--209495	11	3.4	11	92	3	56	44	0	0	55	0.99
210160--210207	21	2.3	21	96	0	87	31	33	18	16	1.94
210216--210323	21	5.3	19	73	16	90	22	20	22	35	1.96
210215--210323	42	2.6	42	92	0	191	22	20	22	35	1.96
210793--210886	3	30.7	3	80	8	100	38	2	0	59	1.09
212060--212100	18	2.2	19	86	4	57	14	4	7	73	1.22
214383--214424	7	6.0	7	81	8	50	14	16	14	54	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214383--214424	15	3.0	14	83	10	50	14	16	14	54	1.71
214483--214540	26	2.3	25	81	3	71	22	12	8	56	1.62
216149--216176	11	2.5	11	100	0	56	46	0	0	53	1.00
218604--219072	81	5.7	83	91	4	695	27	12	22	37	1.90
218604--219069	164	2.8	165	89	4	680	27	12	22	37	1.90
218604--219069	245	1.9	245	90	4	742	27	12	22	37	1.90
220013--220079	35	1.9	35	87	6	100	29	11	23	34	1.91
220172--220332	73	2.2	73	83	5	191	32	17	21	28	1.96
221604--221658	22	2.5	22	96	0	101	34	14	14	36	1.87
222283--222339	17	3.2	17	68	22	53	47	7	24	21	1.75
222112--223246	110	10.3	110	82	8	1239	36	13	19	30	1.91
222173--223233	332	3.2	332	86	7	1393	37	13	19	29	1.90
222971--223174	99	2.1	99	87	3	295	37	11	21	29	1.88
223620--223709	3	30.7	3	79	8	96	38	2	0	58	1.10
223619--223707	17	5.1	17	77	9	90	39	2	0	58	1.11
224866--224914	19	2.7	18	87	9	73	16	4	6	73	1.19
225809--225847	12	3.2	12	96	0	69	0	15	56	28	1.40
225809--225847	6	6.5	6	90	0	60	0	15	56	28	1.40
225936--226002	19	3.3	19	73	15	62	35	19	20	23	1.95
225937--226018	42	2.0	42	92	0	137	37	20	20	20	1.94
225946--226015	21	3.3	21	73	15	81	40	20	20	20	1.92
229294--229340	14	3.4	14	81	0	58	40	6	2	51	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
229942--230027	35	2.5	35	84	0	100	40	20	1	37	1.61
229996--230038	21	2.0	21	100	0	86	46	13	0	39	1.44
230160--230193	16	2.0	18	88	11	54	26	2	5	64	1.30
230661--230906	128	1.9	129	93	0	422	36	13	14	35	1.85
233874--234034	64	2.5	63	85	7	191	34	18	21	26	1.96
235401--235715	149	2.1	149	96	1	578	29	15	20	34	1.93
239050--239210	64	2.5	65	86	7	204	33	18	21	26	1.96
240578--240878	147	2.0	148	97	1	568	28	15	20	34	1.94
243229--243325	29	3.3	29	64	21	74	35	17	6	41	1.75
243246--243339	29	3.2	29	66	16	75	35	21	5	38	1.76
243229--243394	60	2.8	59	84	4	190	32	22	6	38	1.79
253896--253939	6	7.2	6	89	2	52	0	20	54	25	1.45
254530--254669	76	1.9	75	95	1	253	33	10	31	25	1.89
255431--255510	40	2.0	40	90	0	124	43	12	10	33	1.76
256584--256631	24	2.0	23	96	4	87	29	10	20	39	1.86

Tables:   1   2

The End!