genome.fa.s8470.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008470.1 Hibiscus syriacus cultivar Beakdansim tig00111294_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  393165

Tables:   1   2   

This is table  2  of  2  ( 199 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
219893--220150	108	2.4	108	86	1	338	39	17	11	31	1.86
231052--231098	18	2.7	18	90	3	69	31	6	31	29	1.83
231405--232142	244	2.9	247	87	8	994	40	18	13	27	1.88
243196--243235	2	20.0	2	100	0	80	50	50	0	0	1.00
248887--248937	25	2.1	24	85	10	68	25	1	13	58	1.46
254283--254332	24	2.1	24	88	7	75	26	2	14	58	1.47
254809--254855	16	2.9	16	81	9	51	17	8	0	74	1.05
264174--264236	24	2.6	24	100	0	126	39	4	11	44	1.61
266531--266575	18	2.4	18	81	3	54	62	0	13	24	1.31
266515--266567	22	2.3	22	83	6	61	60	0	9	30	1.28
267825--267878	18	2.9	18	89	8	74	12	33	9	44	1.75
268763--268829	20	3.3	20	100	0	134	19	19	26	34	1.96
272400--272689	80	3.6	79	86	3	395	31	24	20	23	1.98
275655--275707	18	3.0	17	83	2	61	18	20	41	18	1.91
279450--279707	43	5.9	44	83	8	316	39	8	22	29	1.83
279454--279707	89	2.9	86	84	8	311	39	8	22	29	1.83
279450--279698	132	1.9	130	84	8	335	39	8	22	28	1.83
280977--281045	21	3.4	21	66	20	56	30	13	20	36	1.90
283573--283608	13	2.6	14	86	4	56	19	0	5	75	1.00
283997--284039	15	2.9	15	93	3	70	23	20	6	48	1.73
285749--285789	3	13.3	3	85	14	57	65	2	0	31	1.05
285749--285802	25	2.2	25	89	0	81	70	1	0	27	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286209--286286	29	2.7	29	83	2	93	46	11	17	24	1.82
286337--286395	30	2.0	30	86	0	82	42	13	11	32	1.81
287240--287644	203	2.0	203	97	2	760	32	17	12	37	1.87
288335--288372	2	19.5	2	94	5	69	50	0	0	50	1.00
293392--293434	3	13.7	3	81	18	52	65	0	0	34	0.93
293390--293417	13	2.2	13	100	0	56	60	0	0	39	0.97
293392--293446	16	3.4	17	85	7	69	69	0	0	30	0.89
293409--293451	14	3.1	14	87	9	54	74	0	0	25	0.82
293869--293920	17	2.9	18	77	5	52	71	0	1	26	0.97
293863--293929	14	5.1	14	75	12	54	71	1	1	25	1.03
294119--294420	159	1.9	159	82	6	387	26	21	15	35	1.94
294559--294595	13	2.8	13	100	0	74	35	0	40	24	1.55
295766--295826	5	11.0	5	77	19	59	3	21	1	73	1.06
295766--295826	17	3.6	16	81	14	70	3	21	1	73	1.06
295752--295826	35	2.1	36	85	11	102	6	20	1	72	1.15
295801--295834	11	3.0	11	83	8	50	2	23	0	73	0.97
304235--304274	3	13.7	3	84	5	55	37	0	2	60	1.11
305595--305627	15	2.2	16	89	10	52	27	0	3	69	1.03
317346--317448	8	13.5	8	79	13	103	75	0	13	9	1.09
317369--317456	13	6.5	13	70	21	58	76	0	14	9	1.02
318684--318977	105	2.8	105	81	5	331	40	15	18	25	1.90
319103--319154	3	17.7	3	88	4	79	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320487--320519	15	2.2	16	89	10	52	27	0	3	69	1.03
326266--326307	22	1.9	22	90	9	68	73	0	0	26	0.83
326260--326305	14	3.3	14	82	17	60	71	0	0	28	0.86
326281--326330	15	3.4	14	83	5	55	74	2	4	20	1.08
326268--326317	22	2.3	22	79	6	57	74	2	2	22	1.03
326575--326777	73	2.8	74	83	4	243	32	14	7	45	1.73
327577--327638	3	20.7	3	100	0	124	32	0	0	67	0.91
328217--328254	19	2.1	19	85	5	51	60	13	5	21	1.52
332963--333044	36	2.4	34	82	11	96	20	24	18	36	1.95
332963--333054	34	2.7	35	83	9	109	21	22	19	35	1.96
345977--346016	16	2.4	16	87	4	53	67	0	2	30	1.04
345971--346022	27	2.0	26	84	3	68	69	0	1	28	0.99
346439--346508	32	2.2	33	94	2	124	50	5	4	40	1.46
346938--347031	29	3.2	28	74	12	89	57	1	6	35	1.31
347307--347341	16	2.2	16	89	0	52	71	2	0	25	1.00
348499--348636	35	3.9	35	82	5	179	21	23	20	35	1.96
348499--348635	71	1.9	71	92	2	231	21	22	20	35	1.96
355856--355895	21	1.9	21	89	0	62	25	40	25	10	1.86
359824--359890	19	3.5	19	95	0	116	26	28	14	29	1.96
365804--366282	233	2.1	227	86	9	646	38	20	13	28	1.90
370852--371194	173	2.0	173	92	0	569	32	17	20	29	1.96
372081--372224	57	2.5	57	82	1	171	32	10	17	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372606--372634	2	14.5	2	100	0	58	48	0	0	51	1.00
377106--377219	42	2.7	40	80	11	131	25	19	24	30	1.98
376924--377461	257	2.1	256	86	6	768	29	19	20	31	1.97
379037--379080	23	1.9	23	81	9	54	15	4	13	65	1.41
379269--379302	11	3.0	11	91	4	50	26	2	0	70	1.01
379327--379391	5	12.6	5	76	12	60	16	3	3	76	1.03
379327--379391	21	2.8	22	81	13	69	16	3	3	76	1.03
379207--379380	81	2.2	81	84	11	225	24	6	6	63	1.42
379357--379392	17	2.2	17	90	5	56	13	2	0	83	0.76
380618--380738	42	2.9	40	77	10	118	24	19	22	33	1.97
382785--382846	10	6.6	9	77	15	63	20	3	4	70	1.19
390396--390465	21	3.3	21	74	21	67	21	1	4	72	1.09
390396--390461	5	12.2	5	75	15	60	21	1	4	72	1.10

Tables:   1   2

The End!