genome.fa.s8472.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008472.1 Hibiscus syriacus cultivar Beakdansim tig00111298_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  548252

Tables:   1   2   

This is table  2  of  2  ( 207 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317186--317444	103	2.5	103	83	3	308	38	12	17	31	1.87
317419--317468	21	2.4	21	89	0	73	38	10	26	26	1.87
317593--317695	52	2.0	52	92	3	172	38	14	15	31	1.88
318867--319220	183	1.9	183	93	1	611	30	20	21	28	1.98
324380--324419	21	1.9	21	90	10	64	47	0	0	52	1.00
324620--324775	79	2.0	79	83	6	201	37	14	8	39	1.78
325613--325964	36	9.8	36	93	0	560	16	28	23	30	1.96
327532--327560	15	1.9	15	100	0	58	48	24	13	13	1.79
327533--327569	15	2.5	15	90	0	56	54	21	10	13	1.69
334397--335181	393	2.0	393	97	1	1506	30	19	25	24	1.98
340637--340676	20	2.0	20	100	0	80	40	5	20	35	1.74
342850--342960	14	8.6	14	65	26	59	41	0	0	57	1.05
342825--342978	64	2.4	64	92	4	258	40	0	1	57	1.07
342916--342972	24	2.3	24	88	8	80	42	0	0	57	0.98
342938--343031	18	5.3	18	72	8	61	41	1	0	57	1.06
342938--343034	20	5.0	19	71	22	60	40	1	0	58	1.05
343312--343433	58	2.0	57	83	12	147	45	2	10	40	1.52
343641--343700	31	1.9	31	89	0	93	45	10	5	40	1.60
346053--346096	17	2.6	17	96	0	79	29	22	13	34	1.93
357033--358387	676	2.0	679	99	0	2664	39	11	14	34	1.82
365924--365976	27	2.0	26	92	3	88	9	24	47	18	1.78
365980--366020	10	4.3	10	80	20	52	24	29	31	14	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373212--373242	7	4.4	7	100	0	62	25	29	29	16	1.96
373239--373305	5	12.8	5	79	14	73	5	20	52	20	1.68
373232--373298	22	3.0	22	95	0	125	8	20	50	19	1.74
373304--373342	19	2.1	19	95	0	69	28	30	23	17	1.97
375004--375064	23	2.7	23	92	0	104	26	27	27	18	1.98
375388--375444	25	2.3	25	87	6	80	45	10	10	33	1.73
376370--376399	3	9.7	3	92	7	51	66	0	33	0	0.92
376370--376402	16	2.0	17	94	5	59	66	0	33	0	0.92
381934--381995	23	2.7	23	94	0	106	27	25	25	20	1.99
394392--394456	29	2.2	28	79	15	69	80	6	13	0	0.90
394389--394473	25	3.3	26	81	16	83	78	7	12	1	1.00
394394--394469	18	3.9	18	80	14	73	78	6	13	1	0.99
394386--394456	30	2.4	31	79	11	85	78	7	14	0	0.94
394392--394478	7	11.9	7	74	15	52	79	6	12	1	0.98
394393--394469	20	3.9	19	79	14	77	79	6	12	1	0.99
394386--394480	16	5.8	16	73	19	63	77	7	13	1	1.02
396068--396813	106	7.0	106	92	0	1186	33	24	18	23	1.96
397543--397647	37	2.8	37	88	0	156	40	15	14	30	1.87
398112--398202	19	4.6	19	70	17	60	32	3	2	61	1.24
398402--398452	18	2.6	19	79	11	59	29	3	3	62	1.31
398510--398590	28	2.8	30	75	11	87	16	7	0	76	1.00
398511--398560	18	2.7	18	81	6	55	14	4	0	82	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398502--398575	28	2.5	29	80	6	87	16	8	0	75	1.02
398527--398575	14	3.3	15	73	21	50	10	8	0	81	0.87
400038--400091	18	2.9	19	78	13	60	29	5	0	64	1.16
403849--403875	3	9.0	3	100	0	54	0	0	66	33	0.92
416245--416605	176	2.1	173	93	2	605	42	4	9	44	1.55
425206--425234	12	2.4	12	100	0	58	0	0	10	89	0.48
442744--442774	15	2.0	16	93	6	55	19	48	19	12	1.81
442775--442859	29	3.0	29	98	1	163	28	7	27	37	1.83
442776--442880	29	3.7	29	89	2	149	29	5	24	40	1.78
443818--444022	42	4.8	41	88	4	268	18	25	24	31	1.97
462321--462345	11	2.3	11	100	0	50	72	0	0	28	0.86
474023--474076	23	2.4	24	77	20	62	53	9	0	37	1.33
474023--474083	22	2.8	23	79	18	60	55	8	0	36	1.30
474345--474486	55	2.6	55	78	10	148	34	21	11	32	1.90
474479--474692	55	3.9	54	84	6	252	29	25	17	27	1.97
474482--474692	110	1.9	110	84	3	282	30	25	17	27	1.97
474709--474781	37	2.0	37	94	0	128	24	23	16	35	1.95
476058--476113	26	2.2	26	90	6	87	8	12	0	78	0.96
476058--476123	26	2.6	27	83	7	66	9	15	0	75	1.03
476080--476196	45	2.5	44	80	10	128	8	19	0	70	1.17
476125--476159	13	2.7	13	86	0	52	5	17	2	74	1.14
476057--476169	45	2.8	38	72	25	99	8	17	0	72	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481185--481218	15	2.3	15	100	0	68	32	20	17	29	1.96
485769--485805	15	2.5	15	100	0	74	21	37	16	24	1.93
490916--490949	2	17.0	2	100	0	68	0	0	50	50	1.00
494809--494837	13	2.2	13	100	0	58	27	0	0	72	0.85
503181--503638	65	7.0	65	83	4	526	34	15	26	23	1.94
506673--506857	94	2.0	94	85	8	252	36	15	17	30	1.91
515706--515740	17	1.9	18	88	11	54	45	0	0	54	0.99
515708--515761	19	2.9	19	81	10	58	46	1	1	50	1.23
516928--516960	2	16.5	2	93	0	57	45	0	0	54	0.99
516928--516963	12	3.0	12	95	0	63	44	0	0	55	0.99
517084--517127	18	2.4	17	85	11	52	22	4	0	72	1.02
517318--517356	19	2.1	18	85	4	51	12	10	0	76	1.01
529067--529262	106	1.8	106	87	2	295	32	25	19	22	1.98
529724--529765	17	2.5	16	88	7	57	47	0	0	52	1.00
529724--529781	10	5.8	11	81	16	65	44	0	0	55	0.99
529732--529781	21	2.6	19	84	12	66	44	0	0	56	0.99
529732--529787	21	2.6	22	81	13	64	44	0	0	55	0.99
530978--531009	2	16.0	2	93	0	55	46	0	3	50	1.17
531017--531060	18	2.4	17	85	11	52	22	4	0	72	1.02
531196--531241	19	2.4	18	82	10	56	15	13	0	71	1.14
541316--541340	2	12.5	2	100	0	50	48	0	0	52	1.00

Tables:   1   2

The End!