genome.fa.s8483.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008483.1 Hibiscus syriacus cultivar Beakdansim tig00111317_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  262260

Tables:   1   2   

This is table  2  of  2  ( 203 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160901--160998	33	2.9	33	93	1	160	42	24	21	11	1.85
160876--161060	19	10.1	19	78	14	183	45	21	21	11	1.83
160876--161060	33	5.1	38	84	9	156	45	21	21	11	1.83
161056--161100	19	2.4	19	84	0	63	8	13	26	51	1.70
161672--161749	41	1.9	41	89	0	120	23	15	20	41	1.90
161653--161746	20	4.7	20	78	2	80	24	17	23	35	1.95
161672--161767	41	2.3	41	82	3	113	21	18	20	38	1.93
162110--162152	22	2.0	22	86	9	61	27	34	9	27	1.88
162547--162590	19	2.3	19	92	7	72	11	18	25	45	1.82
164508--164576	20	3.5	20	83	0	75	36	23	20	20	1.95
164678--164715	20	1.9	20	94	0	67	15	7	23	52	1.69
165193--165271	21	3.8	20	67	12	52	26	29	18	25	1.98
166666--166702	14	2.6	14	91	0	65	29	0	18	51	1.47
166836--166899	20	3.2	20	88	0	83	46	21	17	14	1.83
166889--166930	19	2.2	19	91	0	66	26	21	28	23	1.99
169423--169476	24	2.2	24	93	0	90	40	20	18	20	1.91
169423--169490	24	2.8	24	84	0	64	38	20	17	23	1.93
170132--170164	17	1.9	17	100	0	66	27	6	30	36	1.81
170127--170177	17	2.6	20	76	23	63	27	7	37	27	1.84
170314--170380	20	3.3	20	71	8	64	26	19	25	28	1.99
171805--171846	20	2.1	20	90	0	66	35	21	19	23	1.96
171812--171855	20	2.2	20	87	0	61	36	18	20	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171878--171952	20	3.8	20	68	18	57	25	22	16	36	1.94
171853--171972	40	3.0	39	75	8	107	30	23	13	33	1.93
172761--172795	12	2.9	12	91	0	52	60	22	0	17	1.37
172918--172973	24	2.3	23	88	8	85	21	17	17	42	1.89
175231--175266	18	2.0	18	94	0	63	55	25	2	16	1.55
175531--175635	20	5.2	20	83	0	138	17	17	26	39	1.91
175745--175789	13	3.4	13	78	6	54	55	20	0	24	1.43
175694--175844	64	2.4	64	90	1	232	53	17	1	27	1.54
177122--177189	21	3.2	21	87	6	93	20	17	41	20	1.91
177511--177606	21	4.5	22	71	14	69	35	32	9	22	1.86
177623--177672	21	2.4	21	86	0	73	34	30	14	22	1.93
179248--179291	20	2.2	20	83	0	52	13	15	20	50	1.78
179491--179531	19	2.1	20	90	4	66	68	0	0	31	0.90
179611--179653	22	2.0	21	86	8	61	25	18	39	16	1.91
179801--179851	20	2.5	20	90	0	84	17	9	25	47	1.78
180101--180201	29	3.4	29	86	8	141	36	10	14	37	1.82
180190--180258	31	2.2	31	97	0	129	36	17	7	39	1.77
180098--180232	60	2.2	60	83	7	168	37	11	12	37	1.80
180527--180598	31	2.4	30	82	13	78	38	9	11	40	1.74
180914--181006	31	3.1	31	64	6	73	46	3	10	39	1.55
181883--181915	16	2.1	16	100	0	66	39	12	6	42	1.67
181885--181921	16	2.2	16	90	4	56	45	8	5	40	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182235--182821	251	2.4	240	84	8	810	27	12	18	41	1.86
183184--183222	17	2.3	17	90	0	60	30	17	10	41	1.83
189529--189576	23	2.1	23	92	0	78	39	4	18	37	1.70
189607--189654	23	2.1	23	92	0	78	37	6	16	39	1.74
189934--189972	15	2.5	15	95	4	69	15	5	30	48	1.66
189678--190356	214	3.3	205	77	11	646	31	12	14	41	1.83
189950--190388	200	2.2	200	86	5	595	30	13	14	40	1.85
194527--195488	200	4.8	198	84	3	1178	31	16	13	38	1.87
199703--200523	202	4.2	200	82	5	922	33	16	13	36	1.88
203785--204635	182	4.7	182	87	2	1182	27	16	15	40	1.88
208947--208983	14	2.6	15	91	8	60	24	13	5	56	1.58
212293--212342	20	2.5	21	77	9	59	42	2	0	56	1.11
217897--217944	8	5.8	8	82	7	60	54	0	0	45	0.99
221333--221372	17	2.4	16	83	4	53	37	0	2	60	1.11
221312--221373	21	3.1	20	70	25	51	33	1	1	62	1.14
222021--222058	15	2.5	15	100	0	76	55	0	0	44	0.99
222064--222096	16	2.0	17	88	5	50	48	0	0	51	1.00
222053--222120	23	3.0	23	79	10	70	47	0	0	52	1.00
224823--224886	24	2.7	24	80	11	69	54	1	0	43	1.09
225373--225404	14	2.3	15	89	10	50	56	6	0	37	1.25
225677--225835	46	3.5	46	83	2	187	18	12	25	43	1.85
233105--233232	67	1.9	66	85	1	175	46	7	13	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239963--240001	20	2.0	20	94	0	69	38	0	23	38	1.55
240571--240647	21	3.8	21	72	17	72	25	35	20	18	1.95
242552--242591	21	1.9	21	90	10	64	55	0	7	37	1.29
246401--246475	19	3.6	19	80	16	78	25	26	18	29	1.98
246396--246457	23	2.7	23	80	9	74	29	27	17	25	1.98
247157--247186	6	5.0	6	100	0	60	33	33	0	33	1.58
250924--250983	30	2.0	30	93	6	104	33	6	16	43	1.74
251072--251096	13	1.9	13	100	0	50	16	40	20	24	1.91
251083--251125	22	1.9	23	85	4	61	23	34	20	20	1.96
251159--251235	21	3.7	21	91	1	120	22	23	25	28	1.99
251604--251673	34	2.1	32	84	5	86	35	14	25	24	1.93
252315--252367	19	2.8	19	85	0	61	39	9	22	28	1.85
253416--253504	42	2.2	40	84	8	108	33	21	22	22	1.97
261433--261471	20	2.0	20	94	0	69	35	5	17	41	1.72
261431--261559	46	2.7	48	83	14	185	36	4	14	44	1.66
261499--261551	29	2.0	27	82	14	65	35	3	11	49	1.57
261528--261567	20	2.0	20	90	0	62	37	2	12	47	1.55

Tables:   1   2

The End!